Showing 14 open source projects for "midi data tool"

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  • 1
    ReViMS

    ReViMS

    ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy

    Reconstruction and Visualization from Multiple Sections (ReViMS), an open-source, user-friendly software for automatically estimating volume and several other features of 3D multicellular aggregates (i.e., cancer spheroid, zebrafish, fruit fly). ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. It provides a number of tools...
    Downloads: 0 This Week
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  • 2
    ShinyCardinal

    ShinyCardinal

    Mass spectrometry imaging data analysis software tool

    ShinyCardinal is an open-source and vendor-neutral software that covers all steps in MSI data analysis. It leverages the R package Cardinal to enhance its functionalities by introducing several additional important features, such as the removal of background noises and matrix peaks, deisotoping, absolute quantification, network analysis, and metabolite identification. ShinyCardinal is built as a desktop application with a conveniently designed graphic user interface to provide users a...
    Downloads: 4 This Week
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  • 3

    NEtCAT NanoSurface Analyzer

    NanoSurface Analyzertool is designed for the STM image analysis

    NanoSurface Analyzer tool is designed for the analysis and measurement of surface data at the nanoscale. This application is developed to support researchers working with surface data by providing tools for reading, processing, and analyzing data.
    Downloads: 1 This Week
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  • 4
     JWST MIRI and NIRCam imaging Pipeline

    JWST MIRI and NIRCam imaging Pipeline

    creates seamless mosaics from multiple exposures.

    James Webb Space Telescope (JWST) MIRI and NIRCam imaging data. This tool handles background matching, cosmic ray rejection, and creates seamless mosaics from multiple exposures. Features Multi-instrument Support: Process both MIRI and NIRCam data Background Matching: Automatic background leveling across exposures Cosmic Ray Rejection: Advanced cosmic ray identification and removal Seamless Mosaicking: Create continuous field mosaics from dithered observations Source Extraction: Generate segmentation maps and source catalogs Calibration-ready: Works with JWST pipeline products (_cal.fits, _rate.fits) Memory Efficient: Handles large JWST datasets efficiently Installation Prerequisites Python 3.8 or higher JWST calibration pipeline 4GB+ RAM recommended for large mosaics Quick Install git clone https://github.com/tlcagford/JWST-Merge cd JWST-Merge pip install -r requirements.txt
    Downloads: 1 This Week
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  • 5
    TextureAtlas Toolbox

    TextureAtlas Toolbox

    A powerful, free and open-source tool for TextureAtlases/Spritesheets

    TextureAtlas Toolbox is an all-in-one solution for working with texture atlases and sprite sheets. Extract sprites into organized frame collections and GIF/WebP/APNG animations, generate optimized atlases from individual frames, or convert between 15+ atlas formats. Perfect for game developers, modders, and anyone creating showcases of game sprites. Formerly known as TextureAtlas to GIFs and Frames Licensed under AGPL-3.0 Third-party licenses: See...
    Downloads: 31 This Week
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  • 6
    IAutodraw

    IAutodraw

    Professional vector flow chart drawing software

    A professional office drawing tool that can draw various process diagrams, flow charts, topology diagrams, mind maps, Gantt charts, architecture diagrams, and support process data simulation.
    Downloads: 5 This Week
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  • 7
    Mozilla JPEG Encoder Project

    Mozilla JPEG Encoder Project

    Improved JPEG encoder

    MozJPEG improves JPEG compression efficiency achieving higher visual quality and smaller file sizes at the same time. It is compatible with the JPEG standard, and the vast majority of the world's deployed JPEG decoders. MozJPEG is compatible with the libjpeg API and ABI. It is intended to be a drop-in replacement for libjpeg. MozJPEG is a strict superset of libjpeg-turbo's functionality. All MozJPEG's improvements can be disabled at run time, and in that case it behaves exactly like...
    Downloads: 7 This Week
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  • 8
    ReViSP

    ReViSP

    ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids

    Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later...
    Downloads: 5 This Week
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  • 9
    LaueTools

    LaueTools

    open source python packages for X-ray MicroLaue Diffraction analysis

    LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools
    Downloads: 4 This Week
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  • 10
    CognitionMaster

    CognitionMaster

    object-based image analysis framework

    Wienert S, Heim D, Kotani M, Lindequist B, Stenzinger A, Ishii M, Hufnagl P, Beil M, Dietel M, Denkert C, Klauschen F. CognitionMaster: an object-based image analysis framework. Diagn Pathol 2013, 8:34
    Downloads: 0 This Week
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  • 11

    MatQuantify

    An image processing tool

    MatQuantify, written in MATLAB, detects both large-scale and subtle structural changes in the spindle or DNA and can be used to statistically compare the effects of different treatments. MatQuantify can quantify various physical properties extracted from fluorescence microscopy images, such as area, lengths of various components, perimeter, eccentricity, fractal dimension, satellite objects and orientation. It can also measure textual properties including entropy, intensities and the...
    Downloads: 0 This Week
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  • 12
    TraceX

    TraceX

    MatLab App for calculating fitting isotopic exchange profile data

    MatLab App for calculating fitting isotopic exchange profile data. Developed for measuring self-diffusivity and effective surface exchange coefficient of ion conducting materials. Requires MatLab image processing toolbox If you use this tool for you research, please cite my PhD thesis: Cooper, S. J. Quantifying the Transport Properties of Solid Oxide Fuel Cell Electrodes. (Imperial College London, 2015).
    Downloads: 4 This Week
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  • 13
    Open Cezeri Library

    Open Cezeri Library

    Effective Linear Algebra and Computer Vision Library with JAVA

    OCL stands for Open Cezeri Library (yet another linear algebra and matrix library). This library provides rapid coding as matlab ease of use. To learn for library please try to use test examples at OpenCezeriLibrary\test\test. It is originally developed at el-cezeri laboratory of Siirt University, in order to establish generic framework of reusable components and software tools for machine vision, machine learning, AI and robotic applications. Currently, it holds following main concepts 1-...
    Downloads: 0 This Week
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  • 14
    MatrixUser

    MatrixUser

    A Multi-functional GUI-based Program for Image Processing and Analysis

    ...MatrixUser is a great lightweight tool for users who are working in image processing field under Matlab.
    Downloads: 1 This Week
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