Search Results for "z-"

Reconstruction and Visualization from Multiple Sections (ReViMS), an open-source, user-friendly software for automatically estimating volume and several other features of 3D multicellular aggregates (i.e., cancer spheroid, zebrafish, fruit fly). ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. It provides a number of tools for: (a) segmenting z-stacks of fluorescence images; (b) reconstructing the 3D surface of the aggregates and estimating several features (including the volume). ...

...**Użycie**: Program obsługuje się w terminalu. Po piewszym wykonaniu programu, zostaje utworzony katalog Data, w miejscu gdzie zapisany jest program. Aby wybrać ścieżkę do katalogu z obrazami należy w pliku 'settings.txt' zapisać ścieżkę. Następnie można wykonywać program z: -an, -mnb, -c, -i Link do GitHub: https://github.com/Duke-Axer/Duplicate-Finder Wszystkie pytania proszę pisać na b.gabka.nkn@gmail.com

...We developed a generalized automated workflow including a two-step registration approach for correcting the center of rotation and provide accurate and high-quality 3D reconstruction. *Here we provide the raw tomography videos recorded using the zOPT hardware. *For source codes and more information, please go to https://github.com/Hq-Z/zOPT

F-Tracker3D is acronym of "fluorescent cell tracker in three-dimensions". It is a software tool designed to track fluorescent cells using time-lapse z-stacks of images acquired with a confocal or light-sheet microscope. First, each single cell is tracked in 2D by using the maximum intensity projections of the z-stacks and CellTracker, the free open source software available at: www.celltracker.website. Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z-plane with the maximum intensity value for the different x-y positions previously determined. ...