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... that should mimic metadata configuration by setting header-includes variable. The easiest option to get pandoc-crossref on Windows, macOS, or Linux, is to download pre-built executables available at the releases page. Bear in mind that those are a product of automated build scripts, and as such, provided as-is, with zero guarantees. Feel free to open issues if those don't work though, I'll try to do what I can.
a small .pdf management tool with a command-line UI
Paperboy is a tiny .pdf management utility. If you download papers and other pdf documents, you might have noticed that filenames like 1412.4880.pdf are not terribly helpful for finding anything later on. This tool helps with that. It will offer to rename and move files to a specified folder, and it even gives some filename suggestions by looking at the content and the pdf metadata. Paperboy keeps its file management dumb on purpose (no keeping files in a database or hidden library folder), so...
The open-source, Haskell-built video editor for GIF makers
... as either a GIF or video. Before you download Gifcurry, make sure your machine has GTK+, GStreamer, FFmpeg, and ImageMagick. Linux users can download the AppImage or the prebuilt binaries. If you'd rather install it, you can do so via pacman (Arch) or snap. If you're really courageous, you can build it from source.