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A toolkit for developing and deploying protein structure algorithms.
The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available.
SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE.
The software for solving special problems of mathematics and physics
The project "FD-Method For Solving PDEs" contains the software for solving the nonlinear Klein-Gordon equations (see www.arxiv.org/abs/1203.5979 for more detail).
The project "Infinite systems of matrix equations" consists in developing algorithms and software for solving systems of matrix equations. In the present version the project allows one to solve an infinite system of matrix equations which arises in the theory of stability preserving structural transformations of systems of...
PSIMAP is the Protein Structural Interactome MAP, a map of all the domain level protein-protein interactions in the Protein Data Bank (PDB). PSIsoft is an archive of the software used to generate and analyse PSIMAP.