Search Results for "microscopy"

...Contacts: Filippo Piccinini (emails: filippo.piccinini@irst.emr.it; f.piccinini@unibo.it) Repository: https://sourceforge.net/p/colori-dt/ How to cite us when using the tool: Filippo Piccinini et al. “Colori-DT: an open-source tool for the quantitative evaluation of differences in microscopy color images”.

GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED/LEED/LEEM data analysis. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Latest: NC-AFM and related explorative methods as SQDM can be configured.

...We analysed 217 microscopy images of untreated metaphase cells, 172 images of metaphase cells transfected with small interfering RNAs targeting the luciferase gene (as a negative control), and 230 images of metaphase cells depleted of CHC. Using the quantified data, we trained 23 supervised machine learning classificatio

XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es

BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.

XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing.

...(XMIPP is a suite of image processing programs primarily aimed at obtaining the three-dimensional reconstruction of biological specimens from projection images obtained by transmission electron microscopy)

Camscope is a multi-threaded program for acquiring and quantitatively analyzing images from an IIDC-compliant FireWire camera. It provides an integrated environment for performing quantitative video microscopy for teaching laboratories.

A web-driven database for 2-D and 3-D images, specifically designed for (confocal) microscopy units, but applicable wherever groups of users collaborate with images.

C++ programs and classes for image-processing related to single-particle electron microscopy

A framework for image analysis and data analysis, aimed towards microscopy and the needs of current research.