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The Chemistry Development Kit (CDK) is a scientific, LGPL-ed library for bio- and cheminformatics and computational chemistry written in Java.
The main home page of the CDK is now at: http://cdk.github.io
This program generates graphical tractors using the universal tractor factor (TF). The intended audience is practical tractor theorists and lay people interested in abstract tractor theory.
G.A.V. (Graph Algorithm Visualizer) is a tool that visualizes algorithms from graph theory. A step-by-step visualization from each different algorithm allows the user to understand the particular algorithm very easily.
A Java-based tool for creating, designing and distributing graphical trees that represent syntactic construction of sentences. Useful for drawing trees under X-bar generative theory or any other correlated application.
Chaotic Attractors is a JAVA program to generate images of chaotic attractors. Chaotic attractors are used in chaos theory. Even though they have their seeds in science, they are very artistic. They are great as wallpaper, too.
GoGraph is a tutorial software giving informatics students an easy, interactive and ergonomic way to learn and exercise the graph theory. It is based on JGraph, an open-source graph component for Java.