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The NHD Software Project is a collection of the utilities, scripts, APIs, standards, and application extensions used for the quality assurance of stream and river data, conflation/generalisation of hydrographic data, and other hydrologic data maintenance.
...Another method (CAkOO) performing a k-Correspondence Analysis (i.e. on a multiway table with k entries) on the contingencies of co-occurrenceshas been already "published in my JSS paper about another R package: PTAk.
At the moment the basicscripts I have are based on points and use the R package spatstat, but I would like also to extend to any geometry type. So from all this "a plan" has first to be drawn! ... (see Homepage website for references)