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jLifeLines is a genealogy program, based on the popular LifeLines project, to help with your family history research. Its primary strengths are its powerful scripting language and the ability to easily import and export information in the GEDCOM format.
Arboreum is an XML based platform independent genealogy program designed for managing complex genealogical relationships and data sets. Features include import/export of GEDCOM 5.5 formated data and HTML based data navigation.
Atavi is an interactive genealogical data visualization tool. It uses XSLT to transform XML data into SVG (Scable Vector Graphics) images. Deploy it as a Java servlet and explore visualizations from a browser that supports SVG. GEDCOM import is planned.
Where History Begins is a web application for a private family web site focused on writing and sharing family history and integrating that history with genealogy.
A Java app for the entry, storage, and networking of genealogical information. Unlike most other genealogical database programs, Genealogy uses the rich GENTECH model rather than a custom one or GEDCOM, and can network remote genealogical databases.