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Ruby Research Wiki (RRiki) can be used to keep notes and organize references for research. It uses a browser interface, an intuitive plain text formatting language (markdown), and facilities to cross-reference and hierarchically organize notes
LabDiary is a program for managing laboratory experiments in a sophisticated way. It is very easy to use - you can link experiments logically with each other, associate files to an experiment and structure all your data.
RailsDB is a web application written in Ruby using the Ruby on Rails web framework to provide a generic interface to popular open source databases such as MySQL, PostgreSQL, and SQLite.