Search Results for "gnu science"
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Showing 159 open source projects for "gnu science"
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open enventory
Electronic Laboratory Notebook, chemical inventory & more
Web-based Electronic Laboratory Notebook (ELN) with integrated Chemical Inventory by the group of Prof. Goossen (then TU Kaiserslautern, Germany), based on PHP 8+/MariaDB. Allows (sub-)structure search, reaction planning, management of spectra and literature. -
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GeoTools, the Java GIS toolkit
Toolkit for working with and mapping geospatial data
GeoTools is an open source (LGPL) Java code library which provides standards compliant methods for the manipulation of geospatial data. GeoTools is an Open Source Geospatial Foundation project. The GeoTools library data structures are based on Open Geospatial Consortium (OGC) specifications. -
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RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX documents, sort of a Reference Manager or BibTeX for markup languages. It is portable and known to run on Linux, Free/NetBSD, OSX, Solaris, and Windows/Cygwin.
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Treebolic is a Java suite (including library) whose purpose is to give a hyperbolic rendering of hierarchical data. A tree is rendered with nodes and edges but display space is subject to a particular curvature (hence the name).
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DBCASE is a computer-aided software engineering tool to assist database designers for designing databases, covering the conceptual, logical and physical design stages. It is multiplatform, globalized and intended to work with SGBDs as MySQL and MS Access. This project requires Java 1.8. The main file is acide.jar at the root folder which can be executed with java -jar acide.jar. From version 4.0, the project can be started in Windows with the script start.bat, and includes the Java system,...
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Java 2D & 3D visual entity relationship design & modeling (ERD,SQL) for Oracle,MSSQL,Postgres,MySQL,...,Database change&dictionary management, Swing Data Binding, Apache FOP Renderer for dot matrix printers,Sparx Enterprise Architect Reports + more
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SIDU is a FREE database web GUI written in PHP. Handy and powerful for MySQL + PostgreSQL + SQLite + CUBRID. SIDU is simple and easy DB tool to use! SIDU has all features you need for database admin and web development. It's a great DB admin tool! No installation need. Best database front-end web based tools, cross platform looking no further
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refbase - Web Reference Database
Online bibliographic manager for research groups. Zotero-compatible.
refbase is a web-based bibliographic manager which can import and export references in various formats (including BibTeX, Endnote, MODS XML, and OpenOffice). It can make formatted lists of citations and offers powerful searching, rich metadata, and RSS. -
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Bibliophile is a loose grouping of independent OS or GPL bibliographic systems and aims at promoting discussion, standards and the development of common utilities.
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The Chemicals Database
An Open Source "product catalogue" that is customizable and versatile.
The Chemicals Database is a simple yet effective approach to track a stock of products. It provides a "product catalogue" that is accessible from any workplace over Intranet (http) and the server can be operated "in the cloud". Although this documentation deals in particular with a stock of chemicals in a laboratory, it can easily be adapted to any other "items" such as samples, spare parts, tools and other inventory. The software does not rely on a proprietary "solution" but employs... -
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The Analyses Database is a collection of software to archive and to track rawdata files from analytical instruments. The system is set up using freely accessible tools - MySQL, apache, PHP, Linux. Several utilities for MS Windows are provided.
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The Video Annotation and Reference System (VARS) is a software interface and database system that provides tools for describing, cataloging, retrieving, and viewing the visual, descriptive, and quantitative data associated with video.
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Woda, the Web Oriented Database
Mature SGBD in Perl with a web interface
WODA is a semi-relational database for beginners to work on data and to learn database basis. With web-based GUI and CLI. Currently in rewrite using Bootstrap for web UI. Built with beginners in mind, it is far easier than any other tool I know, while remaining powerful for advanced users (Perl langage is directly available). Databases can be defined, maintained, added-to, modified, and queried entirely through the web interface without programming. It comes from the 90's and thus is... -
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UBA-PVS
UBA Probenverwaltungssystem (Specimen Management System)
This software was implemented by the Laboratory & Information Technology Department at the Fraunhofer Institute for Biomedical Engineering IBMT (St. Ingbert, Germany) as a contract work for the German Federal Environmental Agency. Initially, the application manages specimens with their data in a repository that are collected in the German Environmental Survey (GerES) carried out by the German Federal Environment Agency (Umweltbundesamt – UBA). Version 1.0 of the application was released in... -
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Makumba
Moved to GitHub: https://github.com/makumba
Makumba helps you rapidly develop data driven web applications. Provides a custom JSP taglib as a main interface, but leaves API open for advanced access. It is implemented in Java. Moved to GitHub: https://github.com/makumba -
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Semantic MediaWiki
Lets you store and query data within the wiki's pages.
Semantic MediaWiki is an extension to the MediaWiki software (powering Wikipedia), which extends the Wiki with ideas from the Semantic Web. We focus on usability and tight integration. See the web site for further details and GitHub at https://github.com/SemanticMediaWiki/SemanticMediaWiki/releases for the file releases! (since version 2.4.0). -
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Java Application Framework For All
JAFFA is a Rich Web 2.0 POJO based Event-Driven SOA framework
An Enterprise Focused Java Framework For Rapid Application Development. JAFFA is a Java web application development stack, build around Web 2.0 technologies (ExtJS, DWR, JAWR) with an extensive service architecture, meta-data layer and rules engine (based on JBoss AOP and Drools). It provides an event driven SOA infrastructure with advanced scheduling and queue sub-systems -
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Taxy is a tool for browsing and quering data organized as a taxonomy. Through the use of plugins it allows to connect to different data sources, such as the NCBI species taxonomy or the catalogue of biomedical services of the EU project ACGT.
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SQL Data Workshop
SQL Data Workshop is a Rich SQL Front End System
SQL Data Workshop is a free open source SQL front end that allows to you create and display complex sql queries easily. It supports most of commercial DBMS’s like Microsoft SQL Server, MySQL, Hyper SQL, Derby and Postgre SQL. Support for more DBMS’s will be incorporated in future versions and updates. SQL Data Workshop´s User Graphical Interface allows to you design complex queries involving multiple tables in an agile, single and friendly environment. Thanks to Anudeep and PAscal of... -
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ProC 3.0
smart Workflow Engine
ProC 3.0 is a scientific workflow engine to build, manage and execute workflows (pipelines) in heterogeneous environments, supporting GRID and other means of parallel processing. It includes a data management component (DMC) to transparently access databases for storage of results and automatically adds metadata to track the processing of data products, so that at every time a full processing history is available. The software was developed and used within the ESA Planck satellite mission. -
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wreport has moved to: https://github.com/ARPA-SIMC/wreport dballe has moved to: https://github.com/ARPA-SIMC/dballe bufr2netcdf has moved to: https://github.com/ARPA-SIMC/bufr2netcdf
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A php/mysql application that implements a conference proceedings and papers database and the tools to view and update it. Papers can be linked to more than one proceeding and can have multiple file attachments. Papers can be exported to BibTex or Refer.
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SetFon focus is an interface web based for Praat resources (www.praat.org) wich focus speech sound annalysis; it is a gerent program for acoustic analysis PHP/Mysql based. Developed with the framework SIMP.
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dBASE Reader and Converter
!!! NO LONGER MAINTAINED !!!
dbf is an easy-to-use command line tool to show and convert the content of dBASE III, IV, and 5.0 files. It reads dBASE databases and prints the content to the screen or converts it to comma-separated (*.csv) files which can be opened in Excel, Calc. -
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pyMantis is a data-management system for (systems) biology build on the web2py framework. It features: tree based file explorer, relational db table wizzard with automated creation of user interfaces, internal and external access management, wiki, ..
