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Ligthweight Toolkit is a framework which uses LWJGL.
It makes easier some aspects (input, picture loading, code organisation, ...), and allows to focus on the game code.
Geomajas is a web mapping GIS software with full vectorial editing capabilities, and support for custom attribute relation models in the browser. It has built-in support for any type of query, selection, filtering, snapping, printing, ...
Spring3D enables the object-oriented creation and manipulation of 3D geometry running on top of most 3D API (i.e. JOGL or Android's OpenGL). The reference engine is based on Java3D and is in the application process for being made a Spring Extension.
The project Intergeo co-funded by the Community programme eContentplus develops an open-source library for the common file format it defines to allow developers of dynamic geometry systems to quickly integrate read support for such files.