Showing 11 open source projects for "python tool"

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  • 1
    CAMPARI

    CAMPARI

    Software for molecular simulations and trajectory analysis

    We are proud to introduce version 5 of CAMPARI. We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model. CAMPARI is a joint package for performing...
    Downloads: 6 This Week
    Last Update:
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  • 2
    PhiPsi

    PhiPsi

    An eXtended Finite Element Method (XFEM) Software.

    PhiPsi is a 2D and 3D computational solid mechanics program, which involves the extended finite element method (XFEM), as well as the finite element method (FEM). PhiPsi is written in Fortran and compiled using the GNU Fortran compiler (gfortran). PPView is a visualization tool for PhiPsi. PPView can be used to import Abaqus inp file, view the model defined in the PhiPsi keywords file (*.kpp), edit PhiPsi keywords file, perform a PhiPsi simulation, and view the simulation result files...
    Downloads: 1 This Week
    Last Update:
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  • 3

    GetData

    Scientific Database Format

    The GetData library provides an API to interface with Dirfile databases. The Dirfile database format is designed to provide a fast, simple, scalable format for storing and reading binary, synchronously-sampled, time-ordered data.
    Downloads: 19 This Week
    Last Update:
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  • 4
    GGGears
    This application is intended to be a tool for easy, almost automatic, creation and calculation of gear transmission finite element models. It consists of a geometry and mesh generator based on GMSH and a finite element model based on GETFEM++.
    Downloads: 0 This Week
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  • 5
    OpenFrames

    OpenFrames

    Real-time interactive 3D graphics API for scientific simulations

    ... used by three NASA programs: Copernicus (NASA JSC), the General Mission Analysis Tool (GMAT, NASA GSFC), and a Virtual Reality exploration tool (NASA GSFC).
    Downloads: 0 This Week
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  • 6
    MDcons(Molecular Dynamics consensus)

    MDcons(Molecular Dynamics consensus)

    Interpretation of Biomolecular MD simulations

    MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD.
    Downloads: 0 This Week
    Last Update:
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  • 7
    NanoCap

    NanoCap

    Carbon Fullerene and Capped Nanotube Generator

    NanoCap is a generic application for the construction of low energy fullerene and capped nanotube structures. It provides an ideal tool to accompany the study of finite carbon molecules using computer simulation. The implementation involves a standalone application which includes a GUI and allows for dynamic visual inspection through 3D rendering. In addition, the NanoCap core libraries can be used in custom Python scripts that enabled the user to produce structures in bulk or to include...
    Downloads: 1 This Week
    Last Update:
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  • 8
    Source Navigator NG is a source code analysis tool. With it, you can edit your source code, display relationships between classes and functions and members, and display call trees. You can navigate your source code and easily get to declarations or implementations of functions, variables and macros (commonly called "symbols") which helps you discovering and mapping unknown source code for enhancement or maintenance tasks.
    Downloads: 29 This Week
    Last Update:
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  • 9

    NastranToCodeAster

    Tool to translate Nastran to CodeAster file.

    Tool to translate Nastran to CodeAster file.
    Downloads: 0 This Week
    Last Update:
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  • 10
    ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.
    Downloads: 1 This Week
    Last Update:
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  • 11
    Pyfort is a tool for creating extensions to the Python language with Fortran routines. It supports F77-interfaced routines now, with plans for supporting more of F90 later.
    Downloads: 1 This Week
    Last Update:
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