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ERmod (Energy Representation Module) is a program to calculate the solvation free energy based on the energy representation method (J. Chem. Phys. 113, 6070 (2000)). The program allows users to calculate the solvation free energy to arbitrary solvents, including inhomogeneous systems, and can run in cooperation with state-of-art molecular simulation software, such as LAMMPS, GROMACS and/or AMBER.
Software for molecular simulations and trajectory analysis
We are proud to introduce version 5 of CAMPARI. We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model.
CAMPARI is a joint package for performing...
This project provides a Fortran90 library and a pythonmodule for singular spectrum analyses such as PCA/EOF or MSSA. It is intended for people interested, for example, in analysing climate or financial variability.
This is a Fortran Module that merges the performance of the computation of the Fortran with the power of a Python Package called Matplotlib plot the data computed by your fortran code. It allows you to divide you data into groups of datafiles and each group is stored on its own directory. It allows you to create different types of plotting files such as, PNG file for each datafile and PDF and MPEG files for each group of datafiles. It works with FORMATTED and UNFORMATTED fortran datafiles...
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Pydusa is a package for parallel programming using Python. It contains a module for doing MPI programming in Python. We have added parallel solver packages such as Parallel SuperLU for solving sparse linear systems.