Search Results for "bio-bwa-files"
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Showing 72 open source projects for "bio-bwa-files"
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HEALPix
Data Analysis, Simulations and Visualization on the Sphere
Software for pixelization, hierarchical indexation, synthesis, analysis, and visualization of data on the sphere. Please acknowledge HEALPix by quoting the web page http://healpix.sourceforge.net (or https://healpix.sourceforge.io) and publication: K.M. Gorski et al., 2005, Ap.J., 622, p.759 Full software documentation available at https://healpix.sourceforge.io/documentation.php Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home Exchanging Data with HEALPix (in FITS files): https... -
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[OFFICIAL] tinyfiledialogs v3.18.2 C C++
inputbox password WIN OSX GTK QT Console VCPKG C# Lua R Fortran Pascal
...) - native dialogs osx/unix ASCII UTF-8 - applescript kdialog zenity … ° SSH console / X forwarding ° the dialogs can be forced into console mode ° curses dialogs via Dialog.exe/Dialog (disabled by default) C89/C18 & C++98/C++23 compliant VisualStudio MinGW GCC Clang TinyCC IntelCC OWCC BCC SunCC on Windows Mac Linux Bsd Solaris Minix Raspbian Flatpak bindings: VCPKG C# R Lua Rust Haskell Java AllegroBasic Fortran Pascal D JavaScript Kotlin click tab 'Files' for prototypes -
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Free DELTA
Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format. -
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ransfoil
console to calculate airflow around an airfoil based on RANS approach
... and heat transfer and the effect of surface roughness on near wall flow are considered by this program, it can be used for engineering calculation of the friction drag and heat transfer coefficients on airfoil surface. RANSFOIL reads coordinates data from a 1D XYZ file which describes the grid points or control points on airfoil as only input, then outputs grid and solution files in 2D PLOT3D format to record grid coordinates and airflow data and a report file to show aerodynamic parameters. -
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Mendel’s Accountant is a biologically realistic, forward-time, parallel, numerical simulation program which models genetic change within a population, as affected by mutation and selection.
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libSUFR
A library containing Some Useful Fortran Routines
libSUFR contains Some Useful Fortran Routines that I wrote for my own use, but that may also be useful for others. At the moment, it also "SUFRs" from the fact that Fortran module files are compiler-dependent... -
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myScite
The allRound pocket sized CodeEditor.
Refurbished Scintilla.orgs/SciTE with some additional patches. -- Features -- - Full MinGW and GTK SDKs Autocomplete.(190+) - Do system scripting (bash, applescript, cmd, powershell, perl, j/vbscript, awk) - Examine all sorts of data files (sql, regedit, mib, xml, yaml, json, vcard ...) - Review difference and patch files - Create makefiles (gnu make / cmake) - Edit html, css and config files (with calltips) - Describe circuits in vhdl and spice. ... - And finally; read & write... -
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XML Parser for Fortran. Handles XML and similar structured files. The library provides access (read and write) via a linked list. This is conceptual different from the SAX approach. The data can be held and 'browsed' in memory.
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Zgoubi is a ray-tracing code. Since 1972 it pushes charged particles around accelerators and along beam lines, by step-wise resolution of the Lorentz force equation - and their spins by resolution of Thomas-BMT differential equation. Zgoubi is used for charged particle and beam dynamics simulations, and for accelerator and beam line design. It can simulate hadron and lepton beam and polarization dynamics in a large variety of accelerators (storage ring, synchrotron, cyclotron,...
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SpectralWorks
View, manipulate, analyze (LS fit, SVD, FT), and make figs of, spectra
Program for viewing, editing, manipulating, and analyzing absorbance spectra. Simple arithnetic includes making linear combinatins of up to 10 spectra. Advanced functions include fitting spectra as LC of standard basis spectra, singular value decomposition, Fourier transform, differentiation, integration, global fitting of 3D titration and kinetic data. Graphics features allow composing Figures and export to postscript files which can be converted to pdf, imported into photoshop... -
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Wings for NONMEM (wfn) is a set of DOS batch files and awk scripts to make the use of NONMEM more convenient. Simpler NONMEM execution: nmgo runname Extended control stream with user defined names for THETA(), etc. Automatic structured output ...
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Pysces
PySCeS is the Python Simulator of Cellular Systems
PySCeS is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis. -
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HostDesigner
General purpose de novo molecular design software
.... The results are ranked with respect to desired geometric constraints defined by the user. See the User's Manual for further details including a list of literature citations for example applications. Download includes User's Manual, HostDesigner 4.3 source code (in Fortran), data files, example input, HDViewer executables for MacOS, Linux, and Windows, and mengine source code (in C). HostDesigner was developed and posted by author Dr. Benjamin P Hay -
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freesrs
python library for shock response spectrum (SRS) analysis.
.... an acceleration. freesrs calculates the shock response spectrum (SRS) and is a small library with Python and Fortran files. The Fortran files consist of • SmallwoodFilter.f and • GenShockTimeHistories.f They are linked to Python by using the comfortable f2py tool. Latest version is 2.1.0, including now the ability to perform a full install via setup.py. Library (.pyd) and executable have -
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OzGIS free open-source mapping system
Analysis and display of Census, business, government attribute data
OzGIS is an extensive mapping system for the analysis and display of geographically referenced data. Map data are downloaded from Census bureaux and map agencies or extracted from your own databases. The system can be used to to support management decisions associated with, for example, government planning, marketing, sales, site and personnel location, advertising and research. Systems for Windows, Mac and Ubuntu, source code, sample data files and manuals are included. DOWNLOAD... -
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DBSolveOptimum
The software for systems biology/pharmacology modeling
DBSolveOptimum is a stand-alone software tool for the construction and analysis of mathematical models of biological systems. It is a succession and extension of DBSolve 5 and DBSolve 7, which were popular tools for systems biology. In addition to the capabilities of these software packages, DBSolveOptimum is implemented with new tools for extended data analysis and multiple simulations, which are important for simulation of virtual clinical trials and application of modern modeling... -
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A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.
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APBS
Biomolecular electrostatics software
This software has moved to http://www.poissonboltzmann.org/. -
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General Knowledge Machine Project
Intellect Modeling Kit: assisting research, diagnostics, consulting
...; * Memorizing - new knowledge item creation; * Abstraction – building objects representing typical signs of similar objects groups, data mining. KM is not intended to replace human experts, it is built to multiply abilities. Machine should not be responsible for decisions. The IMK is designed to create ready-to-use software applications using simple text files. Any human knowledge can be uploaded to KM by expert not familiar with software coding. Demos present in kit. Good luck! -
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Abaqus implementation (through UEL subroutine) of the incremental energy/dissipation based arc-length method. Suitable for physically non-linear, geometrically linear solid mechanics problems solved through an implicit solution algorithm. The zip file includes a read-me pdf giving information about how to use the files. The details are presented in the following paper : Author : İ. Özdemir 'An alternative implementation of the incremental energy/dissipation based arc-length control...
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avr-gfortran
program avr microcontroller using fortran77 syntax
This is a pseudo Fortran77 compiler for Atmel AVR microcontroller, written in Fortran using gfortran compiler. The compiler use avr-gcc-4.9.2 as dependency. The recent version of compiler is 1.0.1-alpha. For Windows version (32bit), click https://sourceforge.net/projects/avr-gfortran/files/avr-gfortran-1.0.1-alpha/avr_gfortran-1.0.1-x86win.zip/download Linux version (32bit), click https://sourceforge.net/projects/avr-gfortran/files/avr-gfortran-1.0.1-alpha/avr_gfortran-1.0.1... -
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MinGW - Minimalist GNU for Windows
A native Windows port of the GNU Compiler Collection (GCC)
MinGW: A native Windows port of the GNU Compiler Collection (GCC), with freely distributable import libraries and header files for building native Windows applications; includes extensions to the MSVC runtime to support C99 functionality. All of MinGW's software will execute on the 64bit Windows platforms. -
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This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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RPM files of CalculiX, a free FEM package. See www.dhondt.de for the non-rpm base packages (cgx, ccx)
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A model of the water, C, nutrients and microbial communities of the Amazon River. This project is still in development, the code may not be functional at this time. Most recent code version is under Files, labeled ROCA-date