Showing 20 open source projects for "algorithms"

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  • 1
    CAMPARI

    CAMPARI

    Software for molecular simulations and trajectory analysis

    ... and analyzing molecular simulations, in particular of systems of biological relevance. It focuses on a wide availability of algorithms for (advanced) sampling and is capable of combining Monte Carlo and molecular dynamics in seamless fashion. CAMPARI offers the user a very high level of control over all implemented features. For more information and features, please refer to the project's homepage at http://campari.sourceforge.net/V5
    Downloads: 6 This Week
    Last Update:
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  • 2
    open_data_assimilation
    Generic data-assimilation toolbox written in java, with native (c and fortran) libraries for high performance computing. Provides tools to couple to your own model and a wide range of algorithms, ranging from parameter calibration to Kalman filters.
    Downloads: 0 This Week
    Last Update:
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  • 3
    Habfuzz

    Habfuzz

    A command-line tool for data-driven fuzzy modelling

    Input 1 - A training dataset (multiple observations) of up to four variables (predictors) against one (response variable) Input 2 - A test dataset (multiple observations) of the same four variables with unknown response variable Output - Calculation of the response variable for each test observation using fuzzy logic or fuzzy rule-based Bayesian algorithms HABFUZZ is a habitat model, which can be used in ecohydraulic modelling applications for the calculation of the instream habitat...
    Downloads: 0 This Week
    Last Update:
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  • 4
    TPLS

    TPLS

    High Resolution Direct Numerical Simulation (DNS) of Two-Phase Flows

    ... / ARCHER / ARCHER2 computer time grants, dCSE/eCSE programmes and the EU project EXCELLERAT. The Diffuse Interface Method is now used as the primary method of locating the interface. Evaporation and condensation can now be modelled. Domains with up to 300,000,000 cells have been simulated. We also provide a simplified version of the code 'S-TPLS' to help new users understand the code structure and algorithms. The next step will be to include a model of boiling.
    Downloads: 0 This Week
    Last Update:
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  • 5
    NESSIE is a modern first-principle calculation software that can adequately address the need for ever-higher levels of numerical accuracy and high-performance in large-scale electronic structure simulations, as well as pioneer the fundamental study of quantum many-body effects in a large number of emerging nanomaterials. NESSIE is an electronic structure code that uses a real-space FEM discretization and domain-decomposition (DD) to perform all-electron ground-state DFT and real-time...
    Downloads: 0 This Week
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  • 6
    Towhee is a Monte Carlo molecular simulation code originally designed for the prediction of fluid phase equilibria using atom-based force fields and the Gibbs ensemble with particular attention paid to algorithms addressing molecule conformation sampling.
    Downloads: 9 This Week
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  • 7
    RT Schedule

    RT Schedule

    A realtime-schedule generator for educational purposes

    RT Schedule is a realtime-schedule generator to create and present simple and idealised RT schedules from task lists. The purpose is to compute the basic properties of a task set and create a schedule using the rate monotonic (RM), earliest deadline first (EDF) and least laxity first (LLF) algorithms. The program uses simple, idealised systems, since students must be able to schedule them manually. RT Schedule computes the data and generates clear graphs for lecture notes and exams.
    Downloads: 0 This Week
    Last Update:
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  • 8
    progrep

    progrep

    Utility to show live progress, status & stats for running simulations

    progrep is a command-line tool (Linux) to show live progress report, status & stats of a running simulation or compute job that executes a given number of iterations. It shows % completed, time remaining, time elapsed, number of threads, MPI_Rank(if any), CPU usage & speed (FPS). The FPS measures may be used in benchmarking, e.g. while optimizing HPC algorithms for performance. progrep supports both single-threaded and parallel (multicore/multinode - e.g. OpenMP/MPI) jobs. progrep can also...
    Downloads: 0 This Week
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  • 9

    Xoptfoil

    Airfoil optimization with Xfoil

    Airfoil optimization using the highly-regarded Xfoil engine for aerodynamic calculations. Starting with a seed airfoil, Xoptfoil uses particle swarm, genetic algorithm and direct search methodologies to perturb the geometry and maximize performance. The user selects a number of operating points over which to optimize, desired constraints, and the optimizer does the rest.
    Downloads: 2 This Week
    Last Update:
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  • 10
    This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
    Downloads: 0 This Week
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  • 11

    erf

    error function and related functions in pure standard Fortran 2008

    Fortran 2008 added 3 new intrinsic functions: erf, erfc, erfc_scaled. However, they take only real arguments. This package provides a BSD licensed Fortran 2008 module with erf(z), where z is a complex argument. The calculation is based on calculating w(z), the Faddeyeva (plasma dispersion) function. Two algorithms are implemented: TOMS 680 and 916, http://www.netlib.org/toms/. The simple test program calculates values in the Abramowitz, Stegun.
    Downloads: 1 This Week
    Last Update:
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  • 12

    Runge

    Runge is an Interactive Solver for Systems of Differential Equations

    ... derivatives (Jacobian matrix, for example) it does that analytically, i.e. without using numerical methods. It's portable. It works on Windows and Linux 32 and 64 bit and Mac OS X 64 bit. It's open. It allows you to implement and embed your own algorithms (aka "solvers"). It's easy to use. It allows to export results to MS Excel and MATLAB. It's multilingual. It currently supports Englis and Russian languages. It's free. It's distributed under the Boost Software License.
    Downloads: 1 This Week
    Last Update:
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  • 13
    SMMP (Simple Molecular Mechanics for Proteins) is a program library for protein simulations with an emphasis on advanced Monte Carlo algorithms. It includes various force fields to calculate the energy of a protein and protein-protein interactions.
    Downloads: 0 This Week
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  • 14
    Neutral particle transport on unstructured meshes in 2D XY geometry.
    Downloads: 0 This Week
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  • 15
    A Python environment for large and sparse linear and nonlinear optimization using intuitive interfaces to linear algebra tools and subproblem solvers written in low-level languages. It provides building blocks to experiment with new ideas and algorithms.
    Downloads: 0 This Week
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  • 16
    OpenPT is a software framework for developing applications that solve particle transport problems, including fully-featured deterministic and stochastic transport algorithms, cross section library generation, and depletion and activation methods.
    Downloads: 0 This Week
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  • 17
    IFEFFIT is a library and set of interactive programs for the analysis of x-ray absorption fine-structure (XAFS) data. IFEFFIT combines state-of-the-art analysis algorithms with graphical display of XAFS data, and general data manipulation. It can be
    Downloads: 7 This Week
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  • 18
    An easy to use, yet save and fast linear algebra library. LinAl is designed to be compatible with the one and only true language for numerical computations, which is FORTRAN. It is based on STL containers and algorithms.
    Downloads: 0 This Week
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  • 19
    reputron is a knowledge extraction engine platform that covers all aspect of text mining, relevance, indexing and querying on a corpus of text documents.
    Downloads: 0 This Week
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  • 20
    Blit contains a group of highly efficient iterative sparse solvers that can handle multiple right-hand-sides (i.e. block solvers). We will implement BLQMR, BLGMRES and other block algorithms in MATLAB, FORTRAN 90, C/C++, CUDA and OpenCL.
    Downloads: 0 This Week
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