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Computational prediction of isochores in genome sequences

BMDExpress is a bioinformatics tool used to analyze microarray dose-response data. The analysis provides benchmark dose estimates at which different cellular processes are altered in toxicogenomic experiments.

This FORTRAN program package finds the parameters involved in amylopectin chain-length distribution (CLD) biosynthesis by fitting experimental CLD data to a model which incorporates the underlying starch biosynthesis. The amylopectin CLD biosynthesis model used by this program is explained in the article “A Parameterized Model of Amylopectin Synthesis provides key insights into the Synthesis of Granular Starch”, by Alex Chi Wu, Matthew K. Morell and Robert G. Gilbert. The downloadable...

GeoSolid3D produces 3D geologic solid models, incorporated into the aquifer and confining units of the USGS ground water models, Modflow and Sutra. Uses GIS data of DEMs, geologic maps, and maps of river, watershed, recharge, and aquifer parameters.

Communication by amateur radio on the EME ("moonbiounce") path.

This software is a computer program whose purpose is to fortran mathematics library and some solve linear equation in high performance computing. I create this software for for my last year of engineer school (Scientific Computing Option)

This is a Cxex wrapper release of the Force 3.0 compiler. Link to the original Force developer: force.lepsch.com. With this wrapper OS X users can edit and compile Fortran programs without a Windows machine. Beta and Stable releases available.

Main Phase Modeling, MPM, is a implementation of a 2D staggered grid solution of the elastic waveequation, using a moving zone. This enables both efficient modeling of seismic wide angle data, and modeling of selected propagating phases.

Inspiring Operating System replaces Windows 8, Vista, XP and Mac OS X. (Are you tired of nasty viruses, worms, trojans, rootkits, dialers, spyware, and malware?). If so, make a smart move and get a newbie friendly free Linux Operating System today!

Simple console program intended for factor or principal components analysis. It calculates the optimal number of factors using the Horn's parallel analysis, computes the Kaiser-Meyer-Olkin and a few other measures of sampling adequacy.

RPowr is a simple calculator for planning correlational research. It computes the power of the Pearson correlation coefficient allowing adjustment for unreliability and range restriction of the variables (e.g. predictor and criterion measures).

Sound Propagation and Acoustic Radiation of Turbomachines - Aeroacoustic Noise Suppression Project : A CFD-like CAA code for predicting turbomachines noise.

FRIDA (flexible rapid interactive data analysis) is a generic program for manipulating, fitting, and plotting x,z,y data. It is primarily aimed at spectral analysis, especially in neutron scattering. Note: project has moved away from sf.net.

The Optimized Sparse Kernel Interface (OSKI) Library provides automatically tuned sparse matrix kernels, for use by solver libraries and applications. OSKI is part of the BeBOP project on performance tuning and analysis at U.C. Berkeley. (Go Bears!)

An extension of Code_Aster to add multilingual support to it's varying GUI interfaces included in the default package. Eventually, we also intend to extend Code_Aster by contributing command file templates and extending the analysis abilities.

This will be a place to release tools that have not yet been added to SciPy (or will not be added for whatever reason). Currently an interface to ImageMagick is here.

Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)

PCP (Pattern Classification Program) is an open-source machine learning program for supervised classification of patterns. PCP is a binary executable running on Linux and Windows (under Cygwin environment).

A package of programs for performing extended Hueckel calculations on molecules and solids and visualizing the results. Visualization functionality for some quantum packages (ADF and LMTO) is also provided.

Pyfort is a tool for creating extensions to the Python language with Fortran routines. It supports F77-interfaced routines now, with plans for supporting more of F90 later.

The fst2v5d package converts data stored in the Canadian RPN Standard File (FST) format into Vis5D format. FST files, commonly used to store meteorological data, are scanned by fst2v5d to generate both 4D fields and independent topography input files.

Computational modelling is a interdisciplinary field spanning many techniques and programming languages. AgenTools is a project dedicated to establishing increased modularity in scientific computing packages and a portal linking to other existing project

OpenChem Workbench is an enterprise software suite designed for creating, saving, searching, and exchanging chemical data. It uses existing tools (NIST, Gaussian, CHEMKIN) and its own (easy molecule building, mechanism management, group additivity, etc.)

UPS is a source level C, C++ and Fortran debugger with an X windows interface. It's a very light debugger, but is quite efficient and works well. An ANSI compliant C interpreter is included.

An easy to use, yet save and fast linear algebra library. LinAl is designed to be compatible with the one and only true language for numerical computations, which is FORTRAN. It is based on STL containers and algorithms.