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is a molecular viewer & model builder for quantum chemistry programs. It has an interface with NWChem, CP2K and PC GAMESS/Firefly quantum programs. http://www.biomolecular-modeling.com/Products.html
Open source codes related to dissipative particle dynamics
SunlightDPD provides a home for open source codes related to the dissipative particle dynamics (DPD) simulation method. Currently the file release contains the HNC integral equation code.
FLENS (Flexible Library for Efficient Numerical Solutions) is a C++ library for scientific computing. It can be considered as a very convenient and --- at the same time --- extremely efficient interface for BLAS and LAPACK. But it is much more than this
Lay a foundation for success with Tested Reference Architectures developed by Fortinet’s experts. Learn more in this white paper.
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BlockIt provides a Python framework to scan and parse a program file into constituent nested blocks, however defined, forming a block tree of your code and can be used as a mechanism to "extend" in some sense, the underlying programming language.
Suprangen is a system of libraries for pseudorandom number generation
Suprangen is a system of libraries of pseudorandom number generators for Monte Carlo simulation and similar applications. It includes uniform and normal double precision generators with 32 or 52 random bits, Fortran 90 interfaces, and interfaces to GSL.
cfortran.h is an easy-to-use powerful bridge between C and FORTRAN. It provides a transparent, machine independent interface between C and FORTRAN routines and global data.
Lay a foundation for success with Tested Reference Architectures developed by Fortinet’s experts. Learn more in this white paper.
Moving to the cloud brings new challenges. How can you manage a larger attack surface while ensuring great network performance? Turn to Fortinet’s Tested Reference Architectures, blueprints for designing and securing cloud environments built by cybersecurity experts. Learn more and explore use cases in this white paper.
Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.
A Python environment for large and sparse linear and nonlinear optimization using intuitive interfaces to linear algebra tools and subproblem solvers written in low-level languages. It provides building blocks to experiment with new ideas and algorithms.
Inspiring Operating System replaces Windows 8, Vista, XP and Mac OS X. (Are you tired of nasty viruses, worms, trojans, rootkits, dialers, spyware, and malware?). If so, make a smart move and get a newbie friendly free Linux Operating System today!
Pydusa is a package for parallel programming using Python. It contains a module for doing MPI programming in Python. We have added parallel solver packages such as Parallel SuperLU for solving sparse linear systems.
Add-ons to the ECMWF GRIB API.
This project is about developing and maintaining add-ons to the GRIB API, like language bindings or documentation.
The main GRIB API page is at http://www.ecmwf.int/products/data/software/grib_api.html
ProgPorts is an administrative and easy userinterface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.
MRCWA - Multilayer Rigorous Coupled Wave Analysis is a fast, flexible optical grating solver. It calculates an exact solution to the Maxwell equations for the diffraction of light from an optical grating with arbitrary profile and materials.
The Optimized Sparse Kernel Interface (OSKI) Library provides automatically tuned sparse matrix kernels, for use by solver libraries and applications. OSKI is part of the BeBOP project on performance tuning and analysis at U.C. Berkeley. (Go Bears!)
Visit [http://www.gmfg.buffalo.edu] GMFG website for More information. A user guide for TITAN is made available on GMFG website. We strongly recommend all the users to register with GMFG website for future updates
BrennerMD is a public domain Fortran molecular dynamics program by Donald Brenner and other people. This project is to maintain the original source code and to build a Pythoninterface on top of it.
This will be a place to release tools that have not yet been added to SciPy (or will not be added for whatever reason). Currently an interface to ImageMagick is here.
g2 is an easy to use, portable and powerful 2D graphics library. It provides a comprehensive set of functions for simultaneous generation of graphical output on different types of devices.