Open Source Java Formats and Protocols - Page 8

The ProM Import Framework allows to extract process enactment event logs from a set of information systems. These can be exported in the MXML format, which is the standard event log data format for Process Mining analysis techniques.

The Systems Biology Format Converter (SBFC) is a Java generic framework aiming to translate any systems biology model format into another. The SBFC Web Site providing detailed feature description and instructions for installing, using and developing new modules is: http://sbfc.sourceforge.net/ . Currently, SBFC allows the user to convert SBML models into the formats: BioPax, Matlab, Octave, XPP, DOT, and SBGN. Due to its modular design fast development and addition of new converters is highly facilitated. SBFC can be executed in two modes: 1. standalone executable downloading the package provided in this website; 2. web-service at http://www.ebi.ac.uk/biomodels/tools/converters . For general discussion about SBFC, please use the forum sbfc-forum@googlegroups.com . A mailing-list is also available for developers: sbfc-devel@googlegroups.com Thanks for using SBFC! The SBFC Team

TM4J is a topic map engine implemented entirely in Java. Topic maps are a standard paradigm for the interchange of knowledge structures. This project aims to produce a complete suite of tools for creating, processing and publishing topic map information.

XUI is a Java and XML RIA platform for building smart app's. Swing, AWT and other widget sets can be used on a range of hardware. XUI's modular framework can help many aspects of application development. NetBeans and Eclipse are available.

Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files

ThreeTen provides a modern date and time library for Java and is the reference implementation for JSR-310. It includes many of the lessons of the Joda-Time project and aims to standardise date and time concepts in computing. Code now integrated into OpenJDK, this project is archived.

ASN1 editor plugin for Eclipse

AlizaGameAPI is a robust, open-source Java-based framework designed to streamline and enhance the development of 2D and 3D games. It offers a comprehensive set of tools, utilities, and libraries, empowering developers to create immersive and dynamic gaming experiences with ease. Key Features: Modular Architecture, Rich Graphics and UI Components, Comprehensive Game Logic and Character Management, Environment and World-Building Tools, Statistical and Mathematical Utilities, Enhanced Debugging and Logging, Data Management and Integration, Integrated LLM for NPC Dialog, Cross-Platform Compatibility Dive into the world of game development with AlizaGameAPI. Download the latest version, explore the detailed documentation, and join the community of developers pushing the boundaries of gaming technology.

Batch XML Modifier (BXM) allows you using a list of commands modify the tags and attributes of all XML files with the identical structure in the specified directory and save results in another selected directory. The program performs the uniform changes for all the tags with the identical name and of the same level. Also, the program performs the uniform changes of the selected attribute of all the tags with the identical name and of the same level. See wiki for feature list and distribution links.

IDL specified API for manipulating and processing CellML 1.0 and 1.1. Includes C++ implementation. Accessible from a C++ program, or from any language for which a CORBA language mapping is available Also, a Java wrapper of the API is available.

Library (.NET and Java) to generate and process data in XBRL Global Ledger (XBRL GL) format and link it with multiple XBRL taxonomies for XBRL data generation and reconciliation. Please subscribe to the project RSS feed for upcoming additional features.

It is a lightweight API to invoke web services (RMI, CORBA, WebService (SOAP), XML-RPC, EJB, Hessian, Burlap, REST, ...), how simple Java Object calls. You can integrate Crispy in a Service Oriented Architecture (SOA) or in a Rich Client Platform (RCP).

DOMinator is an XML (de)serialization package for Java objects. The resulting XML files are self-describing and self contained. i.e. no external schemas/definition files required. Extensibility is provided through the use of custom class handlers.

DovetailDB is a schemaless, JSON-based database. It is similar in spirit to Amazon's SimpleDB, but allows for javascript to be executed on the server, and, within that context, provides full transaction support.

EBMLInspect is a Java based, graphical utility to examine and extract the internals of Extensible Binary Meta Language (EBML) files.

ExiProcessor is a command-line program that encodes text XML files into binary EXI and decodes EXI files into XML. It uses the open source Java-based library EXIficient (http://exificient.sourceforge.net) as the EXI parser. In essence, ExiProcessor is a command-line interface to EXIficient. ExiProcessor can help people learn about the various EXI encoding and decoding options and how those options affect compression ratios. The source code itself can also be used as an example of how to integrate EXIficient into existing Java XML libraries. Command Line Examples: Encode XML to EXI: java -jar ExiProcessor.jar -xml_in notebook.xml -exi_out notebook.exi Decode EXI to XML file: java -jar ExiProcessor.jar -exi_in notebook.exi -xml_out notebook.decoded.xml Decode EXI to XML on stdout: java -jar ExiProcessor.jar -exi_in notebook.exi

FOX is a Java library for parsing documents in the Open Financial Exchange (OFX) format.

HTML Article Generator is a tool for quickly generating webpages based on content you enter, including both text and images. These webpages can be customised to give a unique appearance, with a selection of 5 different themes. Other features include the ability to save the current values you have entered and restore these values after future changes have been made. Images can have caption text added to them and given alt text to improve accessibility. Each webpage can also be given a favourite icon. This tool is useful for those who are building a website or blog and quickly need to generate a series of webpages from existing content.

This Java application allow users to easyly create web pages using a block structure to rapresent the HTML components.

Hessian is a replacement for XML when you need something fast and simple while direct access to the data (using a text editor) is less important.

HtZip is a lightweight HTTP Server that serves files out of Zip Files on the server by only uncompressing the requested file.

JNBT is a Java NBT (Named Binary Tag) library. It provides easy to use NBTInputStream and NBTOutputStream classes to read and write NBT files. NBT is the level format used by the Minecraft game.

Jagent is a suite for manipulating Creatures 3 and Docking Station agents. It consists of a sprite tool (Edos) and a PRAY tool (Monk). It requires Java (http://java.com/)

JavaScript Object Graph for Java is a library designed to simplify working with JSON objects in Java code.

The Key Management Interoperability Protocol (KMIP) defines the communication between a Key Lifecycle Management System (KLMS) and its clients. Some companies have been working with proprietary implementations of KMIP in different programming languages for a while, but up until now, no open-source solution existed. KMIP4J is an open-source implementation of KMIP 1.0 in Java. This software was developed by Stefanie Meile and Michael Guster at the University of Applied Sciences "NTB - Interstaatliche Hochschule für Technik Buchs" (http://www.ntb.ch/ntb-homepage.html).