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Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
MCell is a Monte-Carlo simulator for spatial stochastic modelling of protein interactions. It requires a specific input file format called Model Description Language (MDL). MDL2SBML is a converter that translates MDL into the more widely recognised Systems Biology Markup Language (SBML) in order to facilitate model sharing and analysis with a wider range of tools. MDL2SBML translates molecule definitions, reactions and variables from MDL to SBML. MCell concepts that have (as of yet...