Open source finite element software for multiphysical problems
Elmer is a finite element software for numerical solution of partial differential equations and multiphysical problems. It includes models of structural mechanics, fluid dynamics, heat transfer, electromagnetics etc. Elmer home is www.csc.fi/elmer
XDrawChem is an application for chemistry drawing and analysis.
XDrawChem is an application for drawing and analyzing chemical structures and reactions. Please visit the website for full details. Download source and binary releases here, and clone the source from GitHub at the external link above.
AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in 1980 and widely used in the dynamical systems community.
Graphic molecular dynamic package.
Molecular Graphics, Molecular Dynamics, Optimization, Quantum chemistry. Molecular model building. Explicit and implicit water models. http://www.biomolecular-modeling.com/Products.html
is a molecular viewer & model builder for quantum chemistry programs. It has an interface with NWChem, CP2K and PC GAMESS/Firefly quantum programs. http://www.biomolecular-modeling.com/Products.html
Molecular Graphics and Dynamics. Molecular model builder. Part of the Ascalaph Designer http://sourceforge.net/projects/asc-designer/ project. Windows & Linux.
Software for the automation of optics lab experiments
OpticsBenchUI software is dedicated to the automation of optics lab experiments. Optics instruments are interfaced using several other open source projects among which dc1394, aravis, comedi. OpticsBenchUI allows inter-operation of digital cameras (Firewire, GigE Vision, CameraLink), actuators (RS232, USB, Ethernet), spatial light modulators (SLM), digital I/O and analog I/O boards (counters, DAC, ADC) and a Supercontinuum laser source (CP210X USB to UART bridge). Each instrument can be configured and operated individually. Strategy scans involving all instruments can be programmed in a simple acquisition panel. Data are saved in a hierachical way, adapted to scan profiles (HDF5 file format). The graphical user interface is based on open source Qt.
GNU/Grade is an attempt to create an open alternative to commercial color grading systems on Linux, using QT4 framework, ImageMagick, OpenCV and ffmpeg.
General Ocean Turbulence Model
Analysis software for Nbody/SPH or SPH simulations (e.g. performed with Gadget II). See http://sourceforge.net/apps/wordpress/hyplot/about and http://sourceforge.net/apps/trac/hyplot/wiki for more information.
A user community and inclusive package of compatible routines available to diverse astronomy users. Application services to include astronomical lab control, image processing and amateur exploration that continues to adapt to meet a wide range of needs.
Relativistic two-body kinematics calculator for nuclear reaction
Relativistic 2-body kinematics calculator for nuclear reaction, including mass data manager, result table browser and plotter.
gMol molecular graphics
We've moved to https://github.com/tjod/gMol/wiki gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces.
Educational software for studying quantum mechanics. This is the 3rd incarnation of QUANTX software created for Physics Department of Novosibirsk State University. The first version of this software was used in 1985-1991, and the second one was in use since 1991 till 2011. This 3rd version should be useful for universities of Russia and CIS. Translation into English is underway.