Search Results for "bcftools-windows"
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Showing 590 open source projects for "bcftools-windows"
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Local Deep Research
95% on SimpleQA (e.g. Qwen3.6-27B on a 3090)
Local Deep Research is an open-source AI-powered research assistant designed to perform deep, iterative investigations by combining large language models with multi-source search capabilities. It runs locally, giving users full control over their data, privacy, and infrastructure while supporting both local and cloud-based LLMs. The system breaks down complex queries into smaller steps, performs parallel searches across web and academic sources, and generates structured, citation-backed... -
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Claude How-To
A visual, example-driven guide to Claude Code
Claude How-To is a visual, example-driven guide for learning Claude Code. It covers basic concepts, memory, slash commands, hooks, skills, subagents, MCP configuration, plugins, and advanced agent workflows. The project is designed as a practical learning path rather than a simple list of notes. It includes copy-paste templates that users can apply directly to their own projects. The guide also uses diagrams and structured examples to explain not only how features work, but why they matter... -
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Flask Web App Tutorial
Code for the note storing flask web app made during a YouTube video
Flask Web App Tutorial is a beginner-oriented example project that teaches how to build a small note-taking website with Python and Flask. Users can create accounts, sign in, and access notes associated with their own profile. Flask-Login provides session-based authentication and protected routes. SQLAlchemy maps user and note models to a local SQLite database. Authenticated users can create notes and remove notes that belong to their account. The project separates authentication, views,... -
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List of Free Learning Resources
Freely available programming books
List of Free Learning Resources is a curated open-source collection of free programming resources, including books, tutorials, and courses across many languages and disciplines. Maintained by the community, it organizes materials by topic, language, and skill level, making it easy to discover learning resources. The repository includes content on software development, computer science, data science, and more. It is continuously updated with new resources contributed by developers worldwide.... -
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Web Dev for Beginners
About 24 Lessons, 12 Weeks, Get Started as a Web Developer
Web-Dev-For-Beginners is Microsoft’s open source, project-based curriculum for learning web development from scratch. Designed as a 12-week, 24-lesson course, it covers HTML, CSS, and JavaScript fundamentals through hands-on projects like terrariums, browser extensions, and space games. Each lesson includes a mix of pre-lecture quizzes, written content, assignments, challenges, and post-lecture quizzes to reinforce learning. The course also offers global accessibility with translations in... -
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Ansible-lint
Best practices checker for Ansible
Ansible Lint is a command-line tool for linting playbooks, roles and collections aimed towards any Ansible users. Its main goal is to promote proven practices, patterns and behaviors while avoiding common pitfalls that can easily lead to bugs or make code harder to maintain. Ansible lint is also supposed to help users upgrade their code to work with newer versions of Ansible. Due to this reason we recommend using it with the newest version of Ansible, even if the version used in production... -
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Dotbot
A tool that bootstraps your dotfiles
Dotbot is a lightweight tool for bootstrapping and installing dotfiles on new or existing machines. It helps users keep configuration files in version control while automatically linking them into the locations where applications expect to find them. The project is designed to be self-contained, dependency-light, and easy to run from a dotfiles repository. Its configuration can be written in YAML or JSON, making setups readable and repeatable. Dotbot can create folders, clean broken symbolic... -
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Stanza
Stanford NLP Python library for many human languages
Stanza is a collection of accurate and efficient tools for the linguistic analysis of many human languages. Starting from raw text to syntactic analysis and entity recognition, Stanza brings state-of-the-art NLP models to languages of your choosing. Stanza is a Python natural language analysis package. It contains tools, which can be used in a pipeline, to convert a string containing human language text into lists of sentences and words, to generate base forms of those words, their parts of... -
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Concordia
Crowdsourcing platform for full text transcription and tagging
Concordia is a platform for crowdsourcing transcription and tagging of text in digitized images. It was developed by the Library of Congress so that volunteers of all backgrounds could transcribe and tag digitized images of manuscripts and typed materials from the Library’s collections that could not otherwise be done by optical character recognition. -
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nbgrader
A system for assigning and grading notebooks
nbgrader is a tool that facilitates creating and grading assignments in the Jupyter notebook. It allows instructors to easily create notebook-based assignments that include both coding exercises and written free responses. nbgrader then also provides a streamlined interface for quickly grading completed assignments. -
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Archivematica
Free and open-source digital preservation system
Archivematica is a web- and standards-based, open-source application which allows your institution to preserve long-term access to trustworthy, authentic, and reliable digital content. Our target users are archivists, librarians, and anyone working to preserve digital objects. You are free to copy, modify, and distribute Archivematica with attribution under the terms of the AGPLv3 license. Archivematica is an open-source application based on recognized standards that makes it possible to... -
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The Data Engineering Handbook
Links to everything you'd ever want to learn about data engineering
The Data Engineering Handbook is a comprehensive, community-curated repository that aggregates essential learning resources for anyone interested in becoming a professional data engineer. Rather than being a code project itself, it’s a learning handbook that links to books, articles, tutorials, community groups, boot camps, and real-world project examples that collectively form a roadmap to mastering data engineering skills. It includes beginner and intermediate boot camps, interview guides,... -
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Interpretable machine learning
Book about interpretable machine learning
This book is about interpretable machine learning. Machine learning is being built into many products and processes of our daily lives, yet decisions made by machines don't automatically come with an explanation. An explanation increases the trust in the decision and in the machine learning model. As the programmer of an algorithm you want to know whether you can trust the learned model. Did it learn generalizable features? Or are there some odd artifacts in the training data which the... -
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Megatron-LM
Ongoing research training transformer models at scale
Megatron-LM is a GPU-optimized deep learning framework from NVIDIA designed to train extremely large transformer-based language models efficiently at scale. The repository provides both a reference training implementation and Megatron Core, a composable library of high-performance building blocks for custom large-model pipelines. It supports advanced parallelism strategies including tensor, pipeline, data, expert, and context parallelism, enabling training across massive multi-GPU and... -
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nanoGPT
The simplest, fastest repository for training/finetuning models
NanoGPT is a minimalistic yet powerful reimplementation of GPT-style transformers created by Andrej Karpathy for educational and research use. It distills the GPT architecture into a few hundred lines of Python code, making it far easier to understand than large, production-scale implementations. The repo is organized with a training pipeline (dataset preprocessing, model definition, optimizer, training loop) and inference script so you can train a small GPT on text datasets like Shakespeare... -
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codex-orange-book
A Full-Link Guide to Using Codex from Installation to Real-World Cases
codex-orange-book is an unofficial open-source guide for learning and applying Codex in real software workflows. It is written as a full learning resource rather than a conventional software package. The guide covers installation, configuration, core concepts, standard workflows, practical examples, and extension paths. It explains Codex App, Codex CLI, Codex IDE Extension, Codex Web, cloud workflows, Skills, MCP, Git, GitHub, automation, and memory-related usage. It is aimed at developers,... -
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Open Source Vizier
Python-based research interface for blackbox
Open Source (OSS) Vizier is a Python-based interface for blackbox optimization and research, based on Google’s original internal Vizier, one of the first hyperparameter tuning services designed to work at scale. Allows a user to setup an OSS Vizier Server, which can host black-box optimization algorithms to serve multiple clients simultaneously in a fault-tolerant manner to tune their objective functions. Defines abstractions and utilities for implementing new optimization algorithms for... -
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AutoResearchClaw
Autonomous research from idea to paper. Chat an Idea. Get a Paper 🦞
AutoResearchClaw is an open-source framework designed to automatically generate full academic research papers from a single idea or topic. Built in Python, it orchestrates a multi-stage research pipeline that gathers literature, formulates hypotheses, runs experiments, analyzes results, and writes the final paper. The system retrieves real academic references from sources such as arXiv and Semantic Scholar to ensure credible citations. It can automatically generate code for experiments, run... -
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Google Open Source Project Style Guide
Chinese version of Google open source project style guide
Each larger open source project has its own style guide, a series of conventions on how to write code for the project (sometimes more arbitrary). When all the code maintains a consistent style, it is more important when understanding large code bases. easy. The meaning of "style" covers a wide range, from "variables use camelCase" to "never use global variables" to "never use exceptions". The English version of the project maintains the programming style guidelines used in Google. If the... -
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Book1_Python-For-Beginners
The Iris Book: Addition, Subtraction, Multiplication, and Division
Book1_Python-For-Beginners is the introductory volume of the Visualize-ML series, designed to teach Python programming to newcomers with no prior coding experience. The repository emphasizes clarity and gradual skill building, starting from fundamental syntax and moving toward practical programming patterns. It integrates visual aids and annotated code examples to help learners understand not just how Python works but why certain patterns are used. The material is structured to support... -
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Book3_Elements-of-Mathematics
From Addition, Subtraction, Multiplication, and Division to ML
Book3_Elements-of-Mathematics is an open learning resource in the Visualize-ML collection that introduces core mathematical foundations required for modern data science and AI. The repository presents topics such as algebra, calculus fundamentals, and mathematical reasoning using a highly visual and beginner-friendly approach. Its goal is to reduce the intimidation barrier often associated with formal mathematics by combining diagrams, structured explanations, and applied examples. The... -
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Python Tutorial
Xiaobai Python Tutorial
Python Tutorial is a Chinese beginner-friendly Python tutorial repository focused on practical self-study. It is written for learners who want to build programming fundamentals step by step instead of collecting scattered resources without a path. The course is based on Python 3.10+ and marks newer language features from Python 3.11, 3.12, and 3.13 where relevant. It offers both a document-style reading site and an interactive learning site where users can write code in the browser. The... -
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Learn Python Regular Expressions
Learn Python Regular Expressions step by step
Understanding Python Regular Expressions is an example-driven guide that teaches regex from beginner concepts through advanced pattern techniques. It primarily covers Python’s standard re module while also introducing the third-party regex package. Early chapters explain anchors, alternation, grouping, escaping, character classes, and quantifiers. Later material explores backreferences, lookarounds, flags, Unicode, common tasks, debugging, and regex pitfalls. Hundreds of examples show how... -
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Hello Python
Comprehensive tutorial repository aimed at teaching the Python program
Hello-Python is a comprehensive tutorial repository aimed at teaching the Python programming language from scratch for beginners. It includes over 100 classes and about 44 hours of video instruction, combined with code samples, projects, and a chat community for support. The material covers the fundamentals—variables, data types, loops, functions—as well as intermediate topics like date handling, list comprehensions, file IO, regular expressions, modules, and packages. The course is designed... -
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Think Python 2
LaTeX source and supporting code for Think Python, 2nd edition
ThinkPython2 is the repository for the second edition of Allen Downey’s Think Python textbook, which teaches programming fundamentals in Python to beginners. The code includes all of the example programs, exercises, and supplementary files referenced in the book, allowing learners to run the examples, experiment, and extend them. The repository contains clean, well-commented Python scripts that are easy to follow and map directly to chapters of the text, covering topics like variables,...
