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Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other...

The S1000D Transformation Toolkit provides a reference implementation supporting the transformation, packaging and viewing of S1000D data into a SCORM 2004 3rd Edition Content Package, Mobile Web Application and PDF.

ElateXam is a complete toolsuite for electronic exams. It includes several task types (multiple choice, cloze texts, free texts, mapping, drawing, autotool), correction tools, analysis and export features. It's used at the university of Leipzig.

JLink lets users author flow charts based on ISO 5807 and IBM standards. Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts

Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)

LearnML is a XML based markup language to put learning materials in the web. Based on a simple syntax, LearnML documents can be transformed to any kind of web page (HTML, XHTML) or (printable) PDF document.