Open Source Linux Ecosystem Sciences Software - Page 4

MBAS -- Macro-Biological Analysis System -- provides a set of interoperable tools for aid in the analysis of biological data. The backing database is currently PostgreSQL and the primary language is C, though some data entry tools are written in Java.

MCC-LIDAR is a C++ application for processing LiDAR data in forested environments. It classifies data points as ground or non-ground using the Multiscale Curvature Classification algorithm.

MIMES is a suite of dynamic ecological economic computer models specifically aimed at integrating our understanding of ecosystem functioning, ecosystem services, and human well-being across a range of spatial scales.

MetaMaster is a Java-based desktop application for defining, managing and manipulating metadata associated with a collection of data files or datasets (both locally and on the network) which are bundled together into "data packages". ANDS-funded

MeteoStaionNM is application for weather station WS1080(WH1080, National Geographic: 265 NE) on platform linux Ubuntu (Kubuntu). This application creating TXT file with actual values (for example : direction wind, wind speed, pressure, temperature outdoor and indoor etc...). Next, application creating picture file PNG with picture of widged Application, which is possible upload to WEBPage. The Application is written in C++. For exaple, You can open SOURCE code in Qt Creator (download on a web page NOKIA) and compile for Your OS (Windows, Ubuntu, Kubuntu, Symbian etc...). Application is not tested for Windows!!! Notice: You must set permissions of the USB device in the application USERS AND GROUP on the Ubuntu. User XXX and ROOT is need to be add to ONE group.REBOOT. v1.07 Improvements: New Icons and better algorithms for current weather. New configuration options such as font color and background color panel. Communication with the server is implemented, but only in test mode.

Webapplication to collect, store, display and share information about natural events in proteced areas.

The OBO-Annotator is a semantic NLP tool that is designed to give its end-users a great deal of flexibility to combine any number of OBO ontologies from the OBO foundry regardless of their format and use them to annotate text-bases.

Oxygen Model for Microtidal Estuaries and Lagoons-OMMEL. Initially designed to describe O2 dynamics in Alfacs Bay (Ebre Delta, NW Mediterranean, Spain), but usable for any marine coastal ecosystem with small tides. http://tdr.cesca.es/TDX-0222108-113814

The main objective of the ONE project is to enrich Digital Ecosystems with an decentralised negotiation environment and enabling tools that will allow organisations to create contract agreements for supplying integrated services as a virtual organisation

Obs-dm aims to provide a robust and reliable way to collect, analyze, and share observational data. It is being designed for extendability into other areas such as fisheries and habitat science.

OpenAMIS (Open AgroMeteorological Information System) is customable free and open software for websites providing agrometeorological information to farmers and agroindustry.

The PAMGUARD project develops software to help detect, locate and classify marine mammals using Passive Acoustic Monitoring. This project is being migrated to github at https://github.com/PAMGuard. Please go there for the latest updates. thank you sourceforge for hosting us for all these years.

phpWeatherMap is a set of php scripts to generate weather maps for (almost) every country in the world. You can easily download new maps and integrate them into phpWeatherMap. Map and weather data is available for free on the net.

PIHM is a multiprocess, multi-scale hydrologic model where the major hydrological processes are fully coupled using the semi-discrete finite volume method.

PhaenUhr is an easy to use graphical Java application to visualize the impact of climate change on seasonal biological phenomena as two nested phenological clocks. You can configure the clocks in many ways and export them to standard graphic formats.

Moved to: http://parkermills.github.io/phagetherapy/

Piko solar inverter interface. Get online real time data and status. Get also history data. Database management of data. Exports, graphs, ... Manage data and stats using a SQLite or MySQL database. Third party intergration. See the Wiki home page for more informations.

Physical modelling of water transport in plants

Plantlore is a botanical occurence database being written in Java. It also has a BIOCASE Provider software based web interface.

PredatorPreySimulation is a graphical Java application for simulating a predator prey ecosystem using the Volterra-Lotka equations.

PyPak is a Python library for communication with Campbell Scientific dataloggers through the PakBus interface over TCP/IP or serial lines.

A collection of modules and enduser tools designed to help design, test and use system models. While my research (hence, the examples) is focused on hydro-ecological systems, the program can be used on any system characterized by ODEs (and soon PDEs?)

This project has been moved to GitHub, available on: <https://github.com/CELTAB/rfidmonitor>. This repository on SourceForge is no long going to be updated. --//-- This project aims to provide a software solution for the researchers of the Itaipu dam. The system is capable of reading data from the Texas Instruments hardware. It currently works on Linux x86_64 & arm.

R Tools for Biologists (RT4Bio) is a multi-functional package writen in R language developed in the Laboratory of Behavioral and Computational Ecology at State University of Montes Claros - MG - Brazil. Formerly known as RRJ.