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GridSweeper makes it easy to perform batch runs of scientific simulation programs on computational grids/distributed resource management systems.

Extended Bioaccumulation Framework (ExBAF) is a tool for assessing bioaccumulation in foodwebs. Supports several bioaccumulation models and provides tools for analysis and visualization.

BioMa is a specimen based Biodiversity database Manager. It is designed to store, organize, and manipulate biodiversity-related scientific data, either for the purposes of museums, scientific collections, or research projects.

jdwglib is a Java library for accesing DWG files. It is essentially a port from the Pythoncad DWG reading classes by Art Haas. jdwglib manages complex DWG objects allowing users to employ these objects directly in their applications.

Framework for storing and editing Forestry-related XML data, with a specialised graphical interface for each object type. Plug-in API for adding functionality. Coded in Java, uses WebStart for distribution, swing GUI, ~100k lines of code.

DIET Agents is a lightweight, scalable and robust multi-agent platform in Java. It is especially suitable for rapidly developing P2P prototype applications and/or adaptive, distributed applications that use bottom-up, nature-inspired techniques.

MBAS -- Macro-Biological Analysis System -- provides a set of interoperable tools for aid in the analysis of biological data. The backing database is currently PostgreSQL and the primary language is C, though some data entry tools are written in Java.

The class libraries here provide infrastructure for creating simulations of low energy nuclear physics experiments, as well as some useful working programs that do simple simulations and analysis of experiments performed with magnetic spectrographs.

JaWator is a Wa-Tor JavaApplet; a predator-prey simulation resembling a natural ecosystem, this Cellular Automaton delivers fluctuations similar to the Lotka-Volterra equation. Inspired by A.K. Dewdney, Wa-Tor ecosystem (Scientific American, 1984)

Peat stratigraphy plotting program

SiSS(Size Structure Sumilator) Ecological Modeling Simulation for inter-scale model between Individual model and size structure model.

jCase is a simulation toolkit for the evaluation of combinatorial auctions. Such auctions are used to allocate resources that are complementarities or substitutes.

L'objectif de ce projet est de mettre en place une simulation de vie articielle bâtie sur le principe de proie-prédateur, mettant en place un certain nombre de concepts informatiques et biologiques.

This project aims to develop various tools for artificial life and complex systems simulations: from the simulator itself to generic generation tools.

Obs-dm aims to provide a robust and reliable way to collect, analyze, and share observational data. It is being designed for extendability into other areas such as fisheries and habitat science.

A project to display the health of local environment on maps. Environmental data from mobile phones uploaded to a website will display CO2, VOC's, Temp. & atmospheric data & particulates. Anonymous climate data will be publicly available.

The OBO-Annotator is a semantic NLP tool that is designed to give its end-users a great deal of flexibility to combine any number of OBO ontologies from the OBO foundry regardless of their format and use them to annotate text-bases.

An online database and cross-platform, game-like client where gardeners/farmers (small or large scale) can log their actions and measurements (such as weather, yield, current plant size). Any user can then play it back visually, or play with the data and see a simulation inferred from the knowledge database, or calculate an optimal design within given constraints, inferred from the knowledge available at that time. This is both a tool for playing, in order to entertain and inspire...