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Mod for evolution simulation and artificial life program Biogenesis
You can download the Color Mod at the Biogenesis main site too (included in the main download now). You also find the sourcecode there.
If you want to post a review, remember that this is only a modification, so comment on my changes, not on the simulation.
Original project by Joan Queralt Molina:
https://sourceforge.net/projects/biogenesis/
Includes Tyler Colemans "Features Mod":
https://sourceforge.net/projects/biogenesisfeatu/
Biogenesis discussion...
INMS provides an easy to use interface to calculate basic parameters in drip irrigation in Tunisia. it uses FAO's CLIMWAT database to extract ETP values in Tunisian climate stations.
...An (inventory-based) forest dynamic model is hence coupled with a (partial equilibrium) market module and a (micro-based) management one in a national level forest sector model for France (FFSM++).
The model is fully open source (GPL3) with the sole exception that if you publish some document based on a modified version of FFSM++ you need to publish also the modifications you made.
Automated leaf area estimation from scanned leaf images
Black Spot is a free stand alone software and method to estimate leaf area from images of leaves captured using standard flatbed scanners. This easy to use software allows the user to batch process a large number of samples from multiple species with minimal user input.
ElicitN uses R and a tcltk gui interface for eliciting a number from an appropriate expert. The code has been modified from it's original version designed specifically for eliciting the number of species on coral reefs from expert taxonomists. For more information please refer to: http://dx.doi.org/10.1016/j.envsoft.2011.11.011
Please also refer to GitHub for a even simpler more recently maintained version of the project: https://github.com/beckyfisher/ElicitN
Conefor Sensinode quantifies the importance of habitat areas for the maintenance or improvement of landscape connectivity. It is conceived as a tool for decision-making support in landscape planning and conservation. Further details: www.conefor.org
EXPR is a software package for the recording and analysis of animal behaviour. Recording is done by pressing particular keyboard keys on the computer. The software then saves the sequence and timing of behaviours. Note that the DOS (1995: https://sourceforge.net/projects/expr/files/expr/fb-port-expr-00-1995/EXPR-binary-DOS-0.0.1995.tar.gz/download) version is currently the only fully functional and is recommended for use. On modern computers, DOS software can run in DOSBOX (https://www.dosbox.com/).
Program performs bird species recognition by their voices. In early stage of development but working well with some popular species and good samples quality.
MBAS -- Macro-Biological Analysis System -- provides a set of interoperable tools for aid in the analysis of biological data. The backing database is currently PostgreSQL and the primary language is C, though some data entry tools are written in Java.
This project looks at the development of a set of generic models (box,chamber, photo-chemical trajectory) to use with the MCM (www.mcm.leeds.ac.uk). The software provides a tailored FORTRAN interface to the CVODE solver (http://www.llnl.gov/CASC/sundials
The OBO-Annotator is a semantic NLP tool that is designed to give its end-users a great deal of flexibility to combine any number of OBO ontologies from the OBO foundry regardless of their format and use them to annotate text-bases.