Open Source C++ Ecosystem Sciences Software

ToxTrac is a free Windows program optimized for tracking animals. It uses an advanced tracking algorithm and includes Preprocessing, Background subtraction, Thresholding, Post-processing, and Filters. It is robust; very fast; and can handle one or several animals in one or several environments. The program provides useful statistics as output. ToxTrac can be used for fish, insects, rodents, etc. If used, please cite: Rodriguez, A., Zhang, H., Klaminder, J., Brodin, T., Andersson, P. L. and Andersson, M. (2018). ToxTrac: a fast and robust software for tracking organisms. Methods in Ecology and Evolution. 9(3):460–464 Rodriguez, A., Zhang, H., Klaminder, J., Brodin, T., and Andersson, M. (2017). ToxId: an algorithm to track the identity of multiple animals. Scientific Reports. 7(1):14774. Contact and Support: Alvaro Rodriguez (Main Developer), a.tajes@udc.es Magnus Andersson, magnus.andersson@umu.se

An nopensource runoff, erosion and flood model openLISEM. There are two branches: - the classic openLISEM that you can find here: https://github.com/vjetten/openlisem/, please contact Victor Jetten (v.g.jetten@utwente.nl) for details. - the multihazard version of LISEM on this page, for details contact Bastian van den Bout (b.vandenbout@utwente.nl). This software is made available under the licence GPL v3.

Cultivation is a game about the interactions within a gardening community. The resources needed for genetic propagation are tight, and relations can become tense. Cultivation explores self-interest, the common good, conflict, and compromise.

MCC-LIDAR is a C++ application for processing LiDAR data in forested environments. It classifies data points as ground or non-ground using the Multiscale Curvature Classification algorithm.

SeaBreeze is a device driver library that provides an interface to select Ocean Optics spectrometers. It is written in C/C++ and builds and runs on Windows (XP/7/8), MacOSX, and Linux (x86/x64/ARM).

Biosphere3D targets interactive landscape rendering based on a virtual globe. It supports DEM, satellite and aerial images, 3D models (Collada), 3D plant models, and Shapefiles. Biosphere3D was initially developed by the landscape visualization group of the Zuse Institute Berlin by Malte Clasen and is now developed further by Lenné3D GmbH. For more information about the used concepts have a look at the thesis of Malte Clasen: Towards Interactive Landscape Visualization Doctoral Thesis published 2011 via Technische Universität Berlin https://doi.org/10.14279/depositonce-3005

Conefor Sensinode quantifies the importance of habitat areas for the maintenance or improvement of landscape connectivity. It is conceived as a tool for decision-making support in landscape planning and conservation. Further details: www.conefor.org

ConGENER package is a set of combinatorial-computational tools to study families of halogen substituted molecules, so called congeners.

Program performs bird species recognition by their voices. In early stage of development but working well with some popular species and good samples quality.

CDPOPgui is a GUI Frontend for CDPOP What is CDPOP? CDPOP (Cost Distance POPulations) is a spatially-explicit simulator of gene-flow in complex landscapes to explain observed population responses and provide a foundation for landscape genetics. The program implements individual-based population modeling with Mendelian inheritance on a resistant landscape. Simulation begins with an initial homogeneous population and followed by divergence through time as functions of individual based movement, breeding and dispersal on a continuous cost surface. Acknowledgements Allen Warren developed the GUI.The citation for this program is: Landguth EL, Cushman SA (2010) CDPOP: A spatially-explicit cost distance population genetics program. Mol. Ecol. Res. 10, 156-161. Updates to the software, including natural selection, can be referenced with Landguth EL, Cushman SA, Johnson NA (2012) Simulating natural selection in landscape genetics. Molecular Ecology Resources, 12, 363-368.

DUAPI (distributed unified agent programming interface) is a class library for creating and modelling the society of autonomous software agents. It also common to active objects and virtualization paradigm at all.

EcoMod is an OpenGL application for 3D modelling, simulation and visualization of ecosystems. Trees are modelled and used within simulation to render the emerging natural phenomena of spontaneous afforestation process. Multidisciplinary.

This project has been moved to https://bitbucket.org/pbazant/evoversum/src/master/ . Evoversum is a fast Darwinian evolution simulator. The program simulates a 2D world populated with "animals" which struggle for food, reproduce and may also eat each other. The subject of evolution is their behavior, which may become quite complex. There is an updated video tutorial at http://www.youtube.com/watch?v=nPkZvyVDWJU !

Given the importance of anthropogenic determinants in forest ecosystems within Europe, the objective of the FFSM++ model is to link the evidence arising from biological models with socio-economic determinants, where the expected returns of forest investments represent the main drivers. An (inventory-based) forest dynamic model is hence coupled with a (partial equilibrium) market module and a (micro-based) management one in a national level forest sector model for France (FFSM++). The model is fully open source (GPL3) with the sole exception that if you publish some document based on a modified version of FFSM++ you need to publish also the modifications you made.

GSMeteo provides an interface to LaCrosse weather stations through a GSM phone. Users simply call the phone attached to the system and wait for the answer: a voice synthetized with Festival speech libraries will read realtime data coming from the weather

A simple, functional software interface for viewing and manipulating the output of LANDIS files (*.gis extension raster files)

MeteoStaionNM is application for weather station WS1080(WH1080, National Geographic: 265 NE) on platform linux Ubuntu (Kubuntu). This application creating TXT file with actual values (for example : direction wind, wind speed, pressure, temperature outdoor and indoor etc...). Next, application creating picture file PNG with picture of widged Application, which is possible upload to WEBPage. The Application is written in C++. For exaple, You can open SOURCE code in Qt Creator (download on a web page NOKIA) and compile for Your OS (Windows, Ubuntu, Kubuntu, Symbian etc...). Application is not tested for Windows!!! Notice: You must set permissions of the USB device in the application USERS AND GROUP on the Ubuntu. User XXX and ROOT is need to be add to ONE group.REBOOT. v1.07 Improvements: New Icons and better algorithms for current weather. New configuration options such as font color and background color panel. Communication with the server is implemented, but only in test mode.

This project has been moved to GitHub, available on: <https://github.com/CELTAB/rfidmonitor>. This repository on SourceForge is no long going to be updated. --//-- This project aims to provide a software solution for the researchers of the Itaipu dam. The system is capable of reading data from the Texas Instruments hardware. It currently works on Linux x86_64 & arm.

RUDS is a Real-time Ultrasound Detector and Shifter. It has been designed to enable humans to hear rat and mouse vocalizations (30-60 kHz).

Rachis, A Cross-platform Hierarchical Identification System. Rachis is an application for the cataloguing and identification of entities (taxa). It is being implemented from scratch, but is based heavily on the lessons learned from Taxabase.

Sistema Forestal para las Organizaciones de Silvicultores

An open source UI for the Millennium Institutes's Threshold 21 - North America (T21-NA) model written in C# using the Tao Framework.

That project aims at providing a clean API, and the corresponding C++ implementation, able to generate demand for travel solutions (e.g., from JFK to PEK on 25-05-2009) according to characteristics (e.g., Willingness-To-Pay, preferred airline, etc).

This trilateration routine will do anchor-free localization and distance estimation for nodes in a 2-D arrangement, where each node knows only distance information to as few as three other nodes. This code has been used for population biology studies.

The VIP Toolbox is a set of libraries and tools to enable researchers to process image data from the VEGETATION and other remote sensing sensors.