Search Results for "model"
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Showing 35 open source projects for "model"
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... environments (shell scripts, Python, R, ...). Please provide the following reference in your work if you are using SAGA: Conrad, O., Bechtel, B., Bock, M., Dietrich, H., Fischer, E., Gerlitz, L., Wehberg, J., Wichmann, V., and Boehner, J. (2015): System for Automated Geoscientific Analyses (SAGA) v. 2.1.4. Geosci. Model Dev., 8, 1991-2007, https://doi.org/10.5194/gmd-8-1991-2015. For more information visit the project homepage and the wiki.
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openLISEM
A spatial runoff, soil erosion and flooding model
An nopensource runoff, erosion and flood model openLISEM. There are two branches: - the classic openLISEM that you can find here: https://github.com/vjetten/openlisem/, please contact Victor Jetten (v.g.jetten@utwente.nl) for details. - the multihazard version of LISEM on this page, for details contact Bastian van den Bout (b.vandenbout@utwente.nl). This software is made available under the licence GPL v3. -
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The application Bio7 is an integrated development environment for ecological modelling and contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of its plug-in structure and the possibility of customization.
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Binary2Data
Export data from "binary" to "data" .csv from TMS compatible loggers
A script to export / convert data from a "binary" .csv to a "data" .csv file for TOMST TMS model 91, 92 and 94 compatible loggers. If some data has been not correctly exported using the TOMST Lolly software, this script will be able to recover all the data saved in the "binary" .csv file and save it as a "data" .csv file. Simply select all the "binary" files you want to export the information from and the data will be exported to corresponding "data" .csv files. Tested on a handful "binary... -
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Habfuzz
A command-line tool for data-driven fuzzy modelling
Input 1 - A training dataset (multiple observations) of up to four variables (predictors) against one (response variable) Input 2 - A test dataset (multiple observations) of the same four variables with unknown response variable Output - Calculation of the response variable for each test observation using fuzzy logic or fuzzy rule-based Bayesian algorithms HABFUZZ is a habitat model, which can be used in ecohydraulic modelling applications for the calculation of the instream habitat... -
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UIBM (= Universal Individual-Based Model) is an agent-based simulation/3d-dvisualization of the dynamics within multispecies plant communities of Northwest Europe, parameterized from databases using universal scaling laws.
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BEAST
BEAST is a tool dedicated to assess political goals of woody bioenergy
The BioEnergy Allocation and Simulation Tool (BEAST) is a tool dedicated to assess political goals of woody bioenergy production in the context of available biomass potentials and corresponding economic and ecological criteria on a regional level. It is a useful tool in participative decision making processes by iterative simulation and visualization of complex issues. BEAST is a data- and model-driven Decision Support System (DSS) evaluating woody biomass potentials from forests, hedges... -
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A model of the water, C, nutrients and microbial communities of the Amazon River. This project is still in development, the code may not be functional at this time. Most recent code version is under Files, labeled ROCA-date
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Dynamic Linkage
Dynamic Linkage Social Aggregation Model
This project will create a user-friendly modeling system for studying animal social aggregations. The model codifies the a new hypothesis that the animal's state, kinematics, and the group's emergent properties are dynamically linked together, with each one affecting the others. The model will be constructed using Object-Oriented MatLab. -
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MetaModelManager
MetaModel Manager for transdisciplinary species risk assessment
Metamodels provide a novel approach to species risk assessment in which diverse threats are addressed through different disciplines, act at different spatiotemporal scales, or interact in non-linear ways. A metamodel links multiple, discrete models that depict components of a complex system, governing the flow of information between models and the sequence of events in the simulation. Each discrete model simulates processes specific to its disciplinary realm while being informed of changes... -
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hSDM
R package for hierarchical species distribution models
... their probability of occurrence, and assessing uncertainty in the model results. -
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BioSARN
BioSARN is an environmental niche model refinement tool
BioSARN (Biological Species Approximate Realized Niche) refines environmental niche model output using topographic, soil and land class filtering, enhanced temporal corridor definition, niche area quantification and output to a high spatial resolution land class model. This is a Java™ Desktop MicroSoft Windows Application with a simple GUI. Preferably BioSARN should be used with 64-bit Java and a substantial RAM as the application reads input files into memory to minimize compute times. -
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FFSM++
French Forest Sector Model
Given the importance of anthropogenic determinants in forest ecosystems within Europe, the objective of the FFSM++ model is to link the evidence arising from biological models with socio-economic determinants, where the expected returns of forest investments represent the main drivers. An (inventory-based) forest dynamic model is hence coupled with a (partial equilibrium) market module and a (micro-based) management one in a national level forest sector model for France (FFSM... -
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phcfM
R package for modelling anthropogenic deforestation
phcfM is an R package for modelling anthropogenic deforestation. It was named after the REDD+ pilot-project 'programme holistique de conservation des forêts à Madagascar'. phcfM includes two main functions: (i) demography(), to model the population growth with time in a hierarchical Bayesian framework using population census data and Gaussian linear mixed models and (ii) deforestation(), to model the deforestation process in a hierarchical Bayesian framework using land-cover change data... -
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Implementation of HYCOM physical ocean model with coupled biogeochemical component to study nitrogen fixation in the Amazon plume. This project is still in development, the code may not be functional at this time.
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eemod_dnsmod
A detailed nitrogen model inside of a simple ecological model
This is an simple ecological model for lakes and reservoirs that contains a very detailed description of the most relevant nitrogen processes. The model is not very complete, but the main intention is to develop a library to be coupled with other models and use the full-mixed model as a testing version. A lot of things can be improved. I will read all the suggestions but I cannot promise that I will include all of them. Every new part of the code will contain the name of the author... -
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mesoFON
mesoFON is an individual-based mangrove forest model, a KiWi extension
mesoFON is an individual-based mangrove forest model. It is a Java implementation of the KiWi model done with RePast Simphony. It contains several new features: (1) You can add up to 10 species via the GUI. However, in principle, the number of species to be included programmatically is unlimited. (2) You can use a variety of growth functions via typing them in as a string on the GUI. (3) The model is transparent, sinc it comes with the Eclipse workbench of RePast. -
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DyMMM
Dynamic Multispecies Metabolic Modeling framework
The Dynamic Multispecies Metabolic Modeling (DyMMM [dĭm]) framework is a mathematical modeling tool that integrates multiple constraint-based metabolic models into a single dynamic community metabolic model. The DyMMM framework was formerly known as the DMMM framework. Please use the following citation for bibliographical purposes: Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition between... -
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Combo coral reef model
A model that projects climate change impacts to coral reefs
The COMBO model projects climate change impacts to coral reefs based on estimated future changes in sea-surface temperature and ocean acidification. Outputs include estimated timing of bleaching events, changes in coral reef cover, and associated changes in economic values. -
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ChesROMS is developing a ROMS model of the Chesapeake Bay to help in the prediction of Harmful Algal Blooms. We hope to catalyze a new method of community modeling with involvement beyond the core researchers of the ChesROMS project.
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A cross-platform Java program to turn a simple Geiger counter into the equivalent of a state-of-the art digital model, plus some – using your laptop computer.
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MACROMS is a software to model the coastal ocean circulation and fish larvae transport for the USA Mid-Atlantic region, which covers estuaries and continental shelves of NYC, NJ, DE, MD, PA, VA and NC. Rutgers ROMS model is applied for this study.
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A matlab/octave based reaction transport model describing microbially mediated isotope fractionation processes in porous media.
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This project will produce a formal, open source System Dynamics information model specification document to rigorously define the set of model objects, their relationships, their attributes, and the operations performed during modeling and simulation.