Search Results for "command line tools"
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Showing 29 open source projects for "command line tools"
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Habfuzz
A command-line tool for data-driven fuzzy modelling
Input 1 - A training dataset (multiple observations) of up to four variables (predictors) against one (response variable) Input 2 - A test dataset (multiple observations) of the same four variables with unknown response variable Output - Calculation of the response variable for each test observation using fuzzy logic or fuzzy rule-based Bayesian algorithms HABFUZZ is a habitat model, which can be used in ecohydraulic modelling applications for the calculation of the instream habitat... -
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Amplicon_Sequencing_Worfklow
Analyzing amplicon data from sequences to stats
...I created this workflow to create a consistent set of methods for analyzing amplicon sequence data, from when you first receive the sequence data to statistical analyses & data visualization. All you need is to have the latest version of R installed, some experience with the command line & shell, and enough memory to run all of the programs. There are also instructions provided in case you are running these analyses via a computing cluster/Slurm workload manager. You can choose to go through the workflow using either an Rmd script, an html file, or a PDF, or via the homepage link provided. If you have questions or concerns, please don't hesitate to reach out. ... -
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A model of the water, C, nutrients and microbial communities of the Amazon River. This project is still in development, the code may not be functional at this time. Most recent code version is under Files, labeled ROCA-date
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That project aims at providing a clean API, and the corresponding C++ implementation, able to generate demand for travel solutions (e.g., from JFK to PEK on 25-05-2009) according to characteristics (e.g., Willingness-To-Pay, preferred airline, etc).
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Add Two Lines of Code. Get Full APM.Works out of the box for Rails, Django, Express, Phoenix, and more. Monitoring exceptions and performance in no time.
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PyRadMon
Automated reporting of Geiger Muller counter readings to RadMon.org
This project includes several Python and bash scripts designed to connect Geiger Muller counters to report their results to RadMon.org. Soon the script will also feature local logging, graphing and alerting. Just because the Cold War is "over" does not mean that there is no more threat of a radiological attack. In fact, the U.S. Homeland Security Council lists the "Detonation of a 10 Megaton Improvised Nuclear Device" as "Scenario #1" among the top 15 threats to American security. Or,... -
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BETR-Research (BETRS) is a modelling framework to create spatially resolved multimedia models for the environmental fate- and transport of chemical contaminants. It is intended to serve the research community and can be used as a teaching tool.
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Black Spot Leaf Area Calculator
Automated leaf area estimation from scanned leaf images
Black Spot is a free stand alone software and method to estimate leaf area from images of leaves captured using standard flatbed scanners. This easy to use software allows the user to batch process a large number of samples from multiple species with minimal user input. -
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MCC-LIDAR
Multiscale Curvature Classification for LIDAR Data
MCC-LIDAR is a C++ application for processing LiDAR data in forested environments. It classifies data points as ground or non-ground using the Multiscale Curvature Classification algorithm. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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ProSym
Software package that facilitates traffic simulation
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Combo coral reef model
A model that projects climate change impacts to coral reefs
The COMBO model projects climate change impacts to coral reefs based on estimated future changes in sea-surface temperature and ocean acidification. Outputs include estimated timing of bleaching events, changes in coral reef cover, and associated changes in economic values. -
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Artificial life simulation where computer programs (virtual organisms or VOs for short) compete on a grid for computer time. May the most intelligent VO win!
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Simulates data from a gaussian/beta/piecewise-linear species response function on an environmental gradient, with different sampling (error) distributions. See "Cline (biology)" on wikipedia.org.
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A plain C library of functions to compute ecological diversity - equitability - species richness. Includes: Shannon-Wiener, Simpson, Margalef, Berger-Parker, McIntosh, Brillouin, Q, Menhinick, Strong, Gini, RS, Atkinson, Theil, Kolm, ...
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rdv-framework is designed to evaluate and compare ecological conservation reserve selection alogrithms .
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Sandia National Laboratories’ (SNL) environmental assessment modeling tool helps optimize the design of MHK-turbine array layouts within ocean, tidal, and river systems to balance energy generation efficiency with environmental considerations. The new tool, SNL-EFDC, is an augmented version of US EPA’s Environmental Fluid Dynamics Code (EFDC) and includes; (1) a new module that simulates energy conversion (momentum withdrawal) by MHK turbine-like devices including commensurate changes in the...
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Software made available by the Residual Analysis blog, primarily having to do with anthropogenic global warming, e.g. GHCN Processor.
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VIVES is open source software, open source business with open hearts and open minds to fully exploit Vortex Induced Vibrations (VIV) providing clean renewable energy and fresh water wherever it is needed. Visit our blog ... vives.wordpress.com
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This trilateration routine will do anchor-free localization and distance estimation for nodes in a 2-D arrangement, where each node knows only distance information to as few as three other nodes. This code has been used for population biology studies.
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Thermor/BIOS 9xx Weather Station Server
See https://github.com/arcanericky/thermorbios953w
Project at https://github.com/arcanericky/thermorbios953w Developers are encouraged to fork and request pulls as my personal weather station has seen better days. Thermor / BIOS BW953 and BW976 Weather Station daemon for Linux. -
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EXPR is a software package for the recording and analysis of animal behaviour. Recording is done by pressing particular keyboard keys on the computer. The software then saves the sequence and timing of behaviours. Note that the DOS (1995: https://sourceforge.net/projects/expr/files/expr/fb-port-expr-00-1995/EXPR-binary-DOS-0.0.1995.tar.gz/download) version is currently the only fully functional and is recommended for use. On modern computers, DOS software can run in DOSBOX (https://www.dosbox.com/).
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HydroSed2D is a two-dimensional numerical model for hydrodynamics and sediment transport on unstructured mesh.
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PIHM is a multiprocess, multi-scale hydrologic model where the major hydrological processes are fully coupled using the semi-discrete finite volume method.
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R Tools for Biologists (RT4Bio) is a multi-functional package writen in R language developed in the Laboratory of Behavioral and Computational Ecology at State University of Montes Claros - MG - Brazil. Formerly known as RRJ.
