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Natural Docs is an open-source documentation generator for multiple programming languages. You document your code in a natural syntax that reads like plain English. Natural Docs then scans your code and builds high-quality HTML documentation from it.
SourceForge houses the source code and issue database for the old Perl version of Natural Docs, version 1.52. It is still available but no longer being updated. Please see NaturalDocs.org for the 2.x source code and issue...
xindy is an index processor that can be used to generate book-like indexes for arbitrary document-preparation systems. This includes systems such as TeX and LaTeX, the roff-family, and SGML/XML-based systems (e.g., HTML).
Alef++, is a new programming language like Perl and Lisp syntax, with a many changing in classical languages designs, her specification designed to be implemented for any VM, by default can access to any private/protected/default Java fields or methods.
PerlPoint generates presentation slides, docs, brochures and more from an easy to learn but powerful text format. It allows distributed team documentation and can be extended to produce any target format you like.
Scientific Literate Programming using LaTeX, like tgrind but with high level comments.
In other words, a source code fontifier for literate (real) programmers using LaTeX comments.