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Doxygen filters for these programming languages: R from GNU, q from kx.com, MatLab from MathWorks. These programs are implemented in C++ using Flex++. They provide full inline sources not just function definitions.
cite-effect helps understand, validate and refactor programs through static analysis. After building a database, it reports variable's accesses within call tree(s), in a text format suitable for integration into editors (like jEdit or Emacs).
ManC is a tool to help in the development of programs in language C. Is intended to make some interfaces (console (only text), graphical, web, plugins). It is had intention to make this applicatory one to function in the Linux and Windows.