JAutodoc is an Eclipse Plugin for automatically adding Javadoc and file headers to your source code. It is possible to define Velocity templates for Javadoc and file headers.
Wiki: https://github.com/mkesting/jautodoc/wiki
Source Code: https://github.com/mkesting/jautodoc/
Update Site: https://dl.bintray.com/mkesting/jautodoc/update/latest/
Agido is an extensible Agile Documentation Tool for Agile Development Projects. The documentation can be written in plain text in a wiki style markup and exported to different output formats such as PDF and HTML.
WikiJavadoc is an inline Documentation Tool which extends Wiki-Function to Gjdoc. Instead of manipulating the source code change the Java Documentation and write changes back to source, update Java Documentation.
TeXConverter is a converter to parse LaTeX input and create representations of the document in other formats (currently HTML, XDocs(Maven), a specific Wiki-format). Internally a Java object model is used to represent the document, to ease extensibility.
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NoteCat is a web-based application to manage and categorize Wiki notes with user registration and access control. NoteCat demonstrates integration with Hibernate (object-relational persistence) , Lucene (full text search), Radeox (wiki engine), etc.
A Java-Based, wiki-style application for personal use with searching capabilities. It will store your notes in a single, local, crypted Zipfile for easy handling.