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Doxygen filters for these programming languages: R from GNU, q from kx.com, MatLab from MathWorks. These programs are implemented in C++ using Flex++. They provide full inline sources not just function definitions.
IoC container for the configuration and design for experimental design
InPUT offers a descriptive and programming language independent format and IoC (Inversion of Control) container for the configuration and design of computer experiments.
Code and more info can be found on github:
http://github.com/feldob/InPUT