Search Results for "scientific"
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Showing 57 open source projects for "scientific"
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SBW (Systems Biology Workbench)
Framework for Systems Biology
The Systems Biology Workbench(SBW) is a framework for application intercommunications. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32. It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as... -
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Distributed MultiThreaded Checkpointing
Checkpoint/Restart functionality for Linux processes
DMTCP (Distributed MultiThreaded Checkpointing) transparently checkpoints a single-host or distributed computation in user-space -- with no modifications to user code or to the O/S. It works on most Linux applications, including Python, Matlab, R, GUI desktops, MPI, etc. It is robust and widely used (on Sourceforge since 2007). For the newest releases of DMTCP, please go to: https://github.com/dmtcp/dmtcp Among the applications supported by DMTCP are MPI (various implementations),... -
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alio
An "Alternative IO" layer.
The alio library can be dynamically pre-linked to existing executables and replaces file IO (i.e. calls to glibc's IO functions). This allows to gather statistics about IO, create IO trace files, or even implement a different IO behaviour (e.g. use separate IO servers to handle IO). -
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Ichnaea
Performance Timing Tools
Ichnaea is a set of tools that aid in collecting and tracking parameters and timings for parallel applications. The Performance Modelling Timing Module, PMTM, is a library that wraps system timing calls to abstract these from code developers and aid portability. It also has functionality to store parameters and print those, along with the timing information to a comma separated variable file. The Performance Modelling Analysis Tool, PMAT, is coming soon. This is able to read in and... -
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neuranep
Neural Network Engineering Platform
A parallel-programming framework for concurrently running large numbers of small autonomous jobs, or microthreads, across multiple cores in a CPU or CPUs in a cluster. NeuraNEP emulates a distributed processing environment capable of handling millions of microthreads in parallel, for example running neural networks with millions of spiking cells. Microthreads are general processing elements that can also represent non-neural elements, such as cell populations, extracellular space, emulating... -
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Shared Memory Arena
shared memory allocator
a shared memory allocator that provides a simple interface for named shared memory segments; shared memory between any processes; provides shared memory queues; does not use the same address between processes; fast structured arena file scales well -
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YARP, Yet Another Robot Platform. Always dreamt of controlling a humanoid robot? ...well, we do that. A C++ library for IPC, vision and control. This project was migrated to GitHub: https://github.com/robotology/yarp
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Open Source DCS (Distributed Control System). FreeDCS will give you everything you need to control your machines or process. It's being designed to be easy to use and deploy. It's composed of Logic designer, HMI designer and controller software.
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gridrpcdm
Library implementing the GridRPC and GridRPC DM OGF stantards.
This library is a common implementation of both the Open Grid Forum GridRPC API _and_ GridRPC API Data Management standards. It is completely modular and already supports middleware modules for DIET and Ninf, as well as data manager modules for iRods, OwnCloud, rsync, scp. The installation is made easy with cmake and testing examples can be launched in a one line command. -
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FlowVR is an open source middleware tailored for high performance in situ data processing and analytics running on large parallel machines
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Kepler Monitoring
Kepler is a monitoring system for HPC clusters
Kepler is a monitoring system for HPC clusters : it allows users to monitor cluster elements like nodes, network devices and storage nodes. Analyse can be centered on jobs to determine performances and behaviours. -
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Handles Hexahedral, Tetrahedral, Quadrilateral, and Triangle meshes. Lagrangian, Hierarchic, and Monomial finite elements. Interface to PETSc solvers, adaptive mesh refinement, and extreme portablility.
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Portable Linux
Portable Ubuntu Linux for Scientific Computing
...Download the Wubi installer http://releases.ubuntu.com/saucy/wubi.exe 2. Install any flavor of Ubuntu. 3. Swap out the root.disk with the ones provided here. Overview LAMP stack running on localhost (127.0.0.1). Scientific, productivity & media packages include R (Rattle Data Miner), GridEngine, Condor, cooperative computing tools, WINE, LibreOffice, Evolution, Clinica, Neuro Debian Desktop, PsycoPy, OpenVibe, 3DSlicer, Paraview, Openshot. Cheers, Gregory Remington -
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DReAMSim
Dynamic Re-configurable Autonomous Many-task Simulator
DReAMSim provides a simple simulation framework for modeling homogeneous and/or heterogeneous (re)-configurable processing elements in a large-scale distributed environment. In particular, DReAMSim enables users to model task scheduling techniques at a preliminary design stage in order to investigate their performance potential. The simulation framework makes it easy to extract various performance and resource utilization related statistics to study the behavior of different task... -
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SAGA - Simple API for Grid Application. The OGF GWD-R.90 Standard (SAGA Core) Implementation(s). It comes with lots of middleware adaptors for cloud and grid middleware, like Globus, LSF, Condor, Sector/Sphere, EC2, SSH and more.
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Development and support of OCFA have been discontinued. the code has moved to these github repositories: https://github.com/DNPA/OcfaLib https://github.com/DNPA/OcfaArch https://github.com/DNPA/OcfaJavaLib https://github.com/DNPA/OcfaModules https://github.com/DNPA/OcfaDoc If you are interested in contributing to ongoing work on the creation of a community maintained OCFA inspired computer forensic framework, please join the Mattock/MattockFS community page on...
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XDAQ is a software platform designed specifically for the development of distributed data acquisition systems. The development is carried out at CERN, the European Organization for Nuclear Research. Please visit http://xdaq.web.cern.ch
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breve is a free, open-source 3D multi-agent simulation package designed for simulating decentralized systems and artificial life.
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SimKernel controls parameter scans and iterations for any given C++ code / scientific simulation. Parameters, iteration ranges, settings and dependencies are specified in Mathematica syntax. Parallel processing of parameter scanning via MPI.
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libMAGE (Multi-Agent Grid Engine) is a C++ library that provides basis for constructing distributed autonomic systems (running on grids and clusters), that are able to adapt to processor and memory load and node failures.
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Open FMM ( http://www.openfmm.net ) is and open source EM software project. It consist of a fast parallel two-dimensional TM/TE solver called Nero2d.
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PPIV is a parallel software application used in Particle Image Velocimetry (PIV) analysis. The software will compute the vector field for one image pair or multiple image pairs. PPIV can run on a single desktop machine or in a cluster environment.
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A Workflow Management System for scientific environments written in C++ based on the Petri Nets formalism. It uses the Grid Workflow Description Language (GWorkflowDL) as reference language.
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This is an opensource project for the calculation of the mathematical constant Pi. If you are a mathematician or programer please contribute ideas or code for this project. Non professionals are also welcome to contribute.
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A data parallel scientific programming model. Compiles efficiently to different platforms like distributed memory (MPI), shared memory multi-processor (pthreads), Cell BE processor, Nvidia Cuda, SIMD vectorization (SSE, Altivec), and sequential C++ code.
