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Cross-platform command-line tool for creation of PDF documents from scans/photos of pages in JPEG (.jpg) format and the lightest weight ANSI C library to put multiple JPEG files into one PDF file.
You can add handwritten comments to PDF scans (over original images) with xournal: http://xournal.sourceforge.net/
It supports graphics tablets and saves comments to PDFs as vector data.
EMET is an image metadata extraction tool intended to facilitate the management and preservation of digital images and their incorporation into external databases and applications. EMET was created by ARTstor through funding from NDIIPP.