PyMOL is an OpenGL based molecular visualization system
PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!
This is an unusually easy-to-use module for Python that generates navigable 3D animations as a side effect of computations. See vpython.org for current stable downloads and much other information. As of 2012 April 10, source code updates take place at github.com/vpython.
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