SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
A whole bunch of utilities for primitive manipulation of graphic images. Wide array of converters from one graphics format to another. E.g. from g3 fax format to jpeg. Many basic graphics editing tools such as magnifying and cropping.
The intent behind TorrentSpy is to give the BitTorrent power-user all the information they can get in one place. The primary motivating feature is the ability to see in real time the current number of complete/incomplete users on a torrent.
WideStudio is an Integrated Development Environment (IDE) for building window applications in C++, Ruby, Python an Perl for Windows, MacOSX, Linux, FreeBSD, SOLARIS and other unix and BTRON and T-Engine. This is open and free (under MIT/X Consortiun Lice
Tools for accessing and converting various ebook file formats
Log analyser for Squid access.log
Screen squid is web-based interface for viewing reports based on Squid proxy server log files. It can be accessed from web-browser through more than 50 reports. No extra files, only DB. All reports generated "on-the-fly".
Small, powerful, full featured WYSIWYG editor
GGI stands for "General Graphics Interface", and it is a project that aims to develop a reliable, stable and fast graphics system that works everywhere. We want to allow any program using GGI to run on any platform requiring at most a recompile.
Pretty Damn Quick (PDQ) analytically solves queueing network models of computer and manufacturing systems, data networks, etc., written in conventional programming languages. Generic or customized reports of predicted performance measures are output.
Blosxom is a lightweight yet feature-packed weblog application designed from the ground up with simplicity, usability, and interoperability in mind.
Lipi Toolkit is a generic toolkit for online Handwriting Recognition (HWR), and contains tools and algorithms for HWR. The current versions focus on isolated shapes and characters. Details at http://lipitk.sourceforge.net.
Porting of Xfree86 and related X/Unix/Linux projects/applications to QNX and Neutrino operating systems.
Tools for genomic analysis
BamBam includes numerous tools for analyzing DNA next-generation sequencing data. Tools are provided for calling SNPs and indels, identifying large scale deletions, tabulating counts of mapped reads, methylation analysis, and more. Depends on SAMtools (http://samtools.sourceforge.net/) and BAMtools (https://github.com/pezmaster31/bamtools). Also uses BioPerl, which is included in the download tarball.
Run Windows applications on any computer.
WineBOX is an Open Source implementation of the Windows API and a program loader, allowing many unmodified Windows binaries to run on x86-based computers with out need a operative system.
Overview of pre-defined compiler macros for standards, compilers, operating systems, and hardware architectures.
The UMich OAI Toolkit is a set of Perl based tools for harvesting OAI data and creating an OAI-PMH 2.0 compliant data provider.
FLOSSmole (formerly OSSmole) is a set of tools for gathering metrics and publishing analyses about development of free/libre/open source projects. UPDATE: Our data is now released to Google Code. Please see our new home page at http://flossmole.org
Tool to automatically fire regular security scans with Nessus. Compare results of the current scan with the previous scan and report on the delta in a web interface. Main objective of the tool is to make repeated scans more efficient. Not affiliated
Collection of several utilities to work with android backups
It contains the six following projects, both source code and binaries (see README.TXT on Files tab for more details): * Android Backup Extractor * Android Backup Splitter * Android Timestamp Keeper * Helium Backup Extractor * No ADB backup app lister * Tar Binary Splitter
If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).
Huge collection of cliparts in Encapsulated PostScript format derived from Open Clip Art Library. Includes more than 6,500 clip arts freely available without restrictions for free use and distribution. Released as Public Domain.
The continuing development of the extremely versatile Coranto Content Management Framework originated by Elvii, and developed by the community he founded. An incredibly powerful, easily modified solution to any web development and management needs.
Do you still have PFS:First Choice database files? First Choice was a great DOS-base flat file database program. The program, first2html, reads the file and converts it to HTML, as a TABLE. You can put your First Choice database into a web page!
Source code for perl simple text editor.
Simple text editor. Run: $perl 01text0.pl
Apache::ContentHandler is a generic framework for creating mod_perl based applications. It provides a basic event mechanism and a subclassable framework for customizing actions.