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A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows.153 weekly downloads
Advanced numerical instruments: adaptive meshing, FE methods, solvers15 weekly downloads
MOLPAK (MOLecular PAcKing) is used for predicting crystal structures7 weekly downloads
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The Xtal System is a comprehensive suite of small molecule structural solution, refinement and analysis software, supporting both X-ray, neutron and electron diffraction data. It runs on both Unix and MS Win32 platforms and uses tcl/tk graphics.5 weekly downloads
Open Source home for the Virtual Cell platform (VCell). See http://vcell.org/ for details.3 weekly downloads
Tools for working with spherical harmonics2 weekly downloads
Sources of the simulations package for the Planck satellite project1 weekly downloads
Quantum transport code based on Gaussian03/09
An extension of Code_Aster to add multilingual support to it's varying GUI interfaces included in the default package. Eventually, we also intend to extend Code_Aster by contributing command file templates and extending the analysis abilities.
This project contains several libraries written in Fortan 77, Matlab and C++, pertinent to computational fluid dynamics, boundary element methods, finite and spectral element methods, numerical methods, and C++ programming in science and engineering.
Eiger is an electromagnetic software for frequency domain analysis. It consists of physics models for 2D and 3D electromagnetic scattering, radiation, and penetration problems. It contains Green's functions for periodic and layer medium.
An analytical generalized Born model to calculate electrostatic solvation energy that accurately reproduces the linearized Poisson-Boltzmann equation. More about this method is explained in J. Phys. Chem. B, 111, 3055-3061 (2007).
GeoSolid3D produces 3D geologic solid models, incorporated into the aquifer and confining units of the USGS ground water models, Modflow and Sutra. Uses GIS data of DEMs, geologic maps, and maps of river, watershed, recharge, and aquifer parameters.
GVIB is a user friendly package for vibrational analysis. Given a molecular geometry, it will calculate vibrational frequencies and intensities using anharmonic internuclear potential.
Mathematics software platform and script language
Hermes -- a set of libraries and tools for the support of scientific simulation and data archival.
This code performs the finite volume numerical simulation of a general integrate and fire neuron model driven by a stochastic direct current input.
Development of new data assimilation techniques for ocean models
Tempo is a pulsar timing data analysis package.
When something that must be known by everybody, there come this project to ba as 'annoucement' program that tell everybody in this world via internet or cellphone what they must know. For example: tsunamis, earthquake or even meteorite downfall.
Stress intensity factor (SIF) calculation from crack tip displacements