AMOS is a collection of tools for genome assembly
AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.
The PDL module gives standard perl the ability to COMPACTLY store and SPEEDILY manipulate the large N-dimensional data sets that are the bread and butter of scientific computing.
AmphetaDesk is a cross-platform, highly customizable, news aggregator - it sits on your desktop, downloads the latest news that interests you, and displays them in a quick, easy to use and customizable webpage. No webserver required.
The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.
FTE is a text editor geared toward the programmer. Syntax highlighting for over 20 languages, plus configurability for many more, makes this a lightweight but versatile editor for any programmer.
CryptoPy is a pure python implmentation of cryptographic algorithms and applications. The algorithms are developed for readability more than speed. The collection now includes IEEE 802.11i specific algorithms that generated the test vectors for 802.11i.
smooth is an object oriented class library for Win32 and Linux written in C++. It's meant to become an alternative to toolkits like Qt.
This Database Test Suite aims to create database workload test kits used to simulate heavy user loads for OLTP, Decision Support, and e-commerce database transactions. These test kits can also be used to gather performance results for Linux and other
Wsmake is a make tool written in C/C++ for website development and maintenance. It features tag substitution, page ordering, and 'make'-like dependency checking.
Arcade Emulator for M68000, M68020 and Z80 based hardware. See http://www.rainemu.com for more information.
An extremely configurable portable GUI email and news client for Windows/Unix (including OS X) with IMAP, POP3, SMTP, and NNTP support, SSL, flexible address database, Python scripting, powerful filtering, and many other features for advanced users.
Sqlcached is a memory cache daemon, inspired by memcached, but offering more granular control by using SQL interface instead of key-value pairs.
Homepages for my projects: userinfo, pwmd, libpwmd, cboard, ncast, ezxradio and bubblegum. There are also code snippets, both VIM and EPIC scripts and more.
802.11 network tools - allow for detection of networks and services initially using wireless extensions for linux (openbsd porting simple?) and raw 802.11 frames. initial support is for the wavelan/orinoco card and plan support for aironet cards (onc
xrsi is a minimalist (8kb) break enforcer for linux/unix for the prevention of Repetitive Strain Injury (RSI) otherwise known as Occupational Overuse Syndrome (OOS).
A minimal linux rescue distribution with the goals of being small, compatible and very usable. Features as a cozy shell and a multitude of partition rescue/editing tools all based on up-to-date releases like 2.4.x kernel with USB support etc.
A set of tools (proxy, analyzer, proxy database maintenance tools) in Perl. Of interest to those whose Internet access is blocked or censored. The tools provide an 'abstraction' of uncensored outside services, inside the censoring firewall/proxy.
Web-ftp is a cgi ftp client which may be used through SSL to connect to a local ftp server securely, or allow people to ftp from behind a firewall that blocks ftp.
An optimised client-side implementation of the rsync algorithm. It allows updating of files from a remote web server, with efficiency approaching that of rsync -z, without requiring a special remote server application.
IPdump is a tool to generate detailed packet header dumps from packet traces in LBNL's libpcap format (such as generated by tcpdump).
screenie - screen(1) session handler (wrapper)
Recursive mapping/discovery of network devices via CDP/OSPF
CLI based, recursive mapping/discovery of network devices via SNMP(CDP/OSPF/BGP MIBs). SNMP(LLDP MIBs), telnet, and SSH are to follow, along with multi-vendor support (right now only supports cisco devices). Requires Perl and Net::SNMP, Net::SSH, and Net::Telnet modules.
Perl bindings to the Modern OpenGL API
The Perl OpenGL 2 module provides bindings to the modern OpenGL APIs for use from the perl language.
An Gramadóir is a grammar checking engine that is designed for the rapid development of grammar checkers for minority languages and other languages with limited computational resources.