AMOS is a collection of tools for genome assembly
AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.
The PDL module gives standard perl the ability to COMPACTLY store and SPEEDILY manipulate the large N-dimensional data sets that are the bread and butter of scientific computing.
AmphetaDesk is a cross-platform, highly customizable, news aggregator - it sits on your desktop, downloads the latest news that interests you, and displays them in a quick, easy to use and customizable webpage. No webserver required.
The home of the Gene Ontology project on SourceForge, including ontology requests, software downloads, bug trackers, and much, much more.
Webtunnel is an HTTP tunnel with some unique features: it runs in the context of a web server; it uses simple requests/responses for proxy traversal; and it is multi-threaded to allow many parallel connections to many destinations simultaneously.
This Database Test Suite aims to create database workload test kits used to simulate heavy user loads for OLTP, Decision Support, and e-commerce database transactions. These test kits can also be used to gather performance results for Linux and other
pDonkey is the set of tools for manipulating eDonkey peer2peer protocol. The main goal of the project is to provide basic API for the protocol and to create open source server for eDonkey network.
innotop is a powerful monitor for MySQL queries and status information. It is now hosted at http://code.google.com/p/innotop.
DTDParse is a tool for parsing SGML and XML DTDs producing structured documentation or other output forms.
Perl module that provides an object-oriented wrapper around calling the Windows NT command "nbtstat". Analyzes the NetBIOS tables of machines on your LAN to make for nice reporting of computer names, NT domains, usernames, services, and other information.
The script helps commiting changes on several branches in CVS by creating a bunch of CVS commands which the user normally would have to create himself.
PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry with the philosophy that "simple things should be simple". It should be possible to write one-liners that use this toolkit to do meaningful "molecular munging".
A set of tools (proxy, analyzer, proxy database maintenance tools) in Perl. Of interest to those whose Internet access is blocked or censored. The tools provide an 'abstraction' of uncensored outside services, inside the censoring firewall/proxy.
Web-ftp is a cgi ftp client which may be used through SSL to connect to a local ftp server securely, or allow people to ftp from behind a firewall that blocks ftp.
PumpedUp is a group of programs that are used to gather system performance data on a second by second basis and create real time or static graphical web pages. (Does Nagios alarms based on performance too!) Executables for Lin, Win, Solaris included.
Recursive mapping/discovery of network devices via CDP/OSPF
CLI based, recursive mapping/discovery of network devices via SNMP(CDP/OSPF/BGP MIBs). SNMP(LLDP MIBs), telnet, and SSH are to follow, along with multi-vendor support (right now only supports cisco devices). Requires Perl and Net::SNMP, Net::SSH, and Net::Telnet modules.
screenie - screen(1) session handler (wrapper)
Perl bindings to the Modern OpenGL API
The Perl OpenGL 2 module provides bindings to the modern OpenGL APIs for use from the perl language.
mingw-w64 gcc compiler
Bundled gcc compiler and tools for Perl on MS Windows (32 and 64 bit). Provides C, C++, Fortran
PerlCE provides pre-built perl binaries and some popular extensions for various WinCE platforms
This project provides a framework for the research and development of software tools for the analysis of highway capacity (asphalt and concrete, not electronic!) Our first focus will be on perl module implementations of the procedures in the Highway Capa
Mp3CueFuse adds an OSXFuse file system to your Mac, that enables you to mount your EAC-CueSheet-MP3 ripped CD collection to be mounted as a file system. The Albums and Tracks (which must be MP3) are presented as .MP3 files. You will be having gapless playback in iTunes ;-).
Native Perl interface, written in C++ and XS, to the OpenSP SGML and XML Parser.
A web-based software package for comparative genomics
Sybil is a web-based software package for comparative genomics