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Top Apps

  • Focus on your Business with an integrated Business Cloud Focus on your Business with an integrated Business Cloud Icon
    Focus on your Business with an integrated Business Cloud Icon

    Reliable & Secure Business Phone Systems

    • No contracts, no cancellation fees, over 40 features
    • 99.999% financially backed uptime SLA
    • Free, expert support, certified by J.D. Power
  • Ham Radio Control Libraries Icon

    Ham Radio Control Libraries

    Library to control radio transceivers and receivers

    The Hamlib project's purpose is to develop flexible and portable shared libraries that offer a standardized API to control any radio oriented equipment through a computer interface.

  • Primer3 - PCR primer design tool

    Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters needed.

  • Arabeyes

    A project to increase free Arabic fonts on Unix/Linux

    Arabeyes is a Meta project that is aimed at fully supporting the Arabic language in the Unix/Linux environment. It is designed to be a central location to standardize the Arabization process. Arabeyes relies on voluntary contributions.

  • SASHIMI

    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

  • AMOS

    AMOS is a collection of tools for genome assembly

    AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.

  • LaTeX in Word

    LatexInWord provides macros for Microsoft Word that allow the use of LaTeX input to create equations images in both inline and display modes. Similar macros for other word processors will hopefully be added in the future. We are currently in the process of migrating this project to GitHub: Client: https://github.com/EngineeroLabs/latex_in_word Server: https://github.com/EngineeroLabs/Process_LaTeX

  • Modular Audio Recognition Framework

    MARF is a general cross-platform framework with a collection of algorithms for audio (voice, speech, and sound) and natural language text analysis and recognition along with sample applications (identification, NLP, etc.) of its use, implemented in Java.

  • gputils

    gputils is a collection of tools for Microchip PIC microcontrollers. Its goal is to be fully compatible with Microchip's tools, MPASM, MPLINK, and MPLIB.

  • scalpel

    Genetic variants discovery tool

    Bioinformatics pipeline for discovery of genetic variants from NGS reads.

  • miRDeep-P Icon

    miRDeep-P

    miRDeep-P,miRDP for short, is a computational tool for analyzing the microRNA (miRNA) transcriptome in plants.

  • Mapping and Assembly with Qualities

    Maq is a set of programs that map and assemble fixed-length Solexa/SOLiD reads in a fast and accurate way.

  • HaploPainter

    HaploPainter - a pedigree and haplotypes drawing tool written in Perl/Tk. The software processes pedigree information in standard linkage formats combining haplotype information outputs from Simwalk, Genehunter, Allegro and Merlin.

  • BreakDancer

    BreakDancer-0.0.1 is a Perl package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads.

  • GEM library

    A set of very optimized tools for indexing/querying huge genomes/files. Provided so far: a very fast exact mapper, and an unconstrained split-mapper

    Downloads: 35 This Week Last Update: See Project
  • Octave's neural network package

    A neural network package for Octave! Goal is to be as compatible as possible to the one of MATLAB(TM).

    Downloads: 30 This Week Last Update: See Project
  • BioC

    We describe a simple XML format to share text documents and annotation

    A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are interested in reuse, and we focus on common NLP tasks that are broadly useful for textmining.

    Downloads: 26 This Week Last Update: See Project
  • millosh's workshop

    A collection of software made by Milos Rancic.

    Downloads: 19 This Week Last Update: See Project
  • General Graphics Interface

    GGI stands for "General Graphics Interface", and it is a project that aims to develop a reliable, stable and fast graphics system that works everywhere. We want to allow any program using GGI to run on any platform requiring at most a recompile.

    Downloads: 17 This Week Last Update: See Project
  • Trinity RNA-Seq Assembly

    The Trinity RNA-Seq Assembly project provides software solutions targeted to the reconstruction of full-length transcripts and alternatively spliced isoforms from Illumina RNA-Seq data.

    Downloads: 17 This Week Last Update: See Project
  • GARM Meta assembler

    Meta Assembler for de novo assembly results. GARM (Genome Assembly Reconciliation and Merging) is a pipeline to merge results from different assemblers or results from different DNA sequencing technologies.

  • easyLINKAGE

    http://genetik.charite.de/hoffmann/easyLINKAGE/index.html for most recent versions! easyLINKAGE is a GUI for automated setup/performance of linkage analyses/simulation programs (FastLink, SuperLink, SPLink, GeneHunter-/PLUS, Allegro, PedCheck, SimWalk).

  • DAWGPAWS Icon

    DAWGPAWS

    DAWGPAWS is a suite of command line programs written in Perl that accelerates annotation of genes and transposable elements in plant genomes by automating the process of running annotation programs and facilitating combined evidence annotation curation.

  • ZORRO

    ZORRO is a probabilistic masking program that assigns confidence scores to each column in a multiple seqeunce alignment. These scores can then be used to account for alignment accuracy in phylogenetic inference pipelines.

  • STIRRUPS

    STIRRUPS

    Downloads: 12 This Week Last Update: See Project
  • Cisco IOS command line simulator

    OECE is a Cisco IOS interface simulator. Useful for beginner to Cisco's IOS command line interface. Supports basic commands like 'enable', 'configure terminal'. It has FULL support for keyboard shortcuts, command shortcuts, history, errors and more.

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