niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/
Toolboxes for SPM (http://www.fil.ion.ucl.ac.uk/spm/) developed at Freiburg Brain Imaging (http://fbi.uniklinik-freiburg.de/)
Matlab's MAT-file I/O API in JAVA. Supports Matlab 5 MAT-flie format reading and writing. Written in pure JAVA.
Octave Eclipse GUI
Octave development environment built upon Eclipse's Dynamic Languages Toolkit (http://www.eclipse.org/dltk/). Distributed as an Update site for Eclipse 3.7 Indigo and Indigo-based package for several platforms. Supports search, autocompletion, launching scripts, interactive console, debug and integrated plotting on Octave versions 3.2.x, 3.4.x and 3.6.x. The current goal is to make it running out-of-box on multiple platforms. Currently only Linux and Windows are supported. Mac support is possible. The project needs a maintainer for Mac version, since I don't have Mac to build Octclipse and test it on this platform. Also, it is worth to support Eclipse 4.0 Juno with DLTK 4.
This site contains four packages of Mass and mass-based density estimation. 1. The first package is about the basic mass estimation (including one-dimensional mass estimation and Half-Space Tree based multi-dimensional mass estimation). This packages contains the necessary codes to run on MATLAB. 2. The second package includes source and object files of DEMass-DBSCAN to be used with the WEKA system. 3. The third package DEMassBayes includes the source and object files of a Bayesian classifier using DEMass. DEMassBayes.7z has jar file to be used with WEKA and a readme file listing parameters used. The source files are included in DEMassBayes_Source.7z. 4. The four package is MassTER includes source and JAR file to be used with WEKA system..
Speedy Composer – Artificial Neural Network Melody Composer.
Speedy Composer is a composition software that makes use of artificial neural networks to compose melodies. Using Speedy Composer you can create an infinite number of royalty free compositions that you can use in your own projects, share with friends, or just listen for your enjoyment, all for free! Speedy Composer generates compositions complete with melodies and accompaniment, which you can download as MIDI files or MP3 files. The melodies will be composed according to the chord progression selected by you. You can choose from a number of chord progressions available. Before you can use Speedy Composer, you need to register to Speedy Net, or log-in if you already have a Speedy Net account. The melodies you compose will be saved to your personal folders on Speedy Composer, and if you want you can make your compositions public and share them with your friends. Have fun creating music with Speedy Composer!
Automated bacterial and archaeal genome annotation system
SILA is a system for automated annotation of bacterial and archaeal genomes. It provides accurate gene prediction using a combination of tools (Prodigal and HGF) and a web site for task management and visualization of annotation. This project is in alpha stage. Please use the online service available at: http://www.bioinfo.ufpr.br/SILA/login.jsp Documentation (portuguese only): http://hdl.handle.net/1884/34801
C.elegans nematode worm tracker data analysis software. Loads video files generated by Worm Tracker 2.0 from Schafer Lab in MRC Laboratory of Molecular Biology, Cambridge, UK.
EveAI processes the data assuming that it has already been read by a sensor. Theoretically this should give it reflex behavior. Now the end product should be a self conscious machine future plans are to include the field of robotics.
A graphical MatLab framework for estimating the parameters of, modeling and simulating static and dynamic linear and polynomial systems in the errors-in-variables context with the intent of comparing various estimation strategies.
This project's goal is to design a system in which a robot learns how to pick up objects.
MEX/JNI is a set of bindings between MATLAB and Java using Mathworks' External Interface API and Java Native Interface (JNI).
The class libraries here provide infrastructure for creating simulations of low energy nuclear physics experiments, as well as some useful working programs that do simple simulations and analysis of experiments performed with magnetic spectrographs.
An Initiative to help the Engineering & Research Community
The SeismoWeb Toolbox is a collection of Matlab and Java tools providing access to seismological webservices. The current focus lies on the NERIES earthquake data portal, but it is intended to add more webservices in the future.
The main goal of this project is to build simple computer image recognition system. This project is part of my B.A. preparations.
UoP Computer Engineering Practicals from SE to BE!!!
Tool for visualizing artificial neural networks in Matlab using the Matlab Neural Network Toolbox (see wiki for details).
Image Processing/Tracking Software for off-line analysis of Field Biology Videos/Recordings.
compariSong is an audio tool to support query by singing/humming. It compares a database of popular songs with a hummed-by-user melody and returns the closest matches.