PHP based web bibliography management system
Aigaion is a php/mysql based multi-user system for managing annotated bibliographies. It allows the user(s) to order publications in a self-chosen (overlapping) topic structure, offers BibTex and RIS import and export and has an intuitive user interface. Currently looking for contributors and co-maintainer(s) to handle planned upcoming releases. Check http://www.aigaion.de for more. Support and Documentation can be found at http://www.aigaion.de.
Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no
Toolkit for working with and mapping geospatial data
GeoTools is an open source (LGPL) Java code library which provides standards compliant methods for the manipulation of geospatial data. GeoTools is an Open Source Geospatial Foundation project. The GeoTools library data structures are based on Open Geospatial Consortium (OGC) specifications.
Search engine and data mining applications and ClueWeb datasets.
The Lemur Project develops search engines, browser toolbars, text analysis tools, and data resources that support research and development of information retrieval and text mining software, including the Indri search engine in C++, the Galago search engine research framework in Java, the RankLib learning to rank library, ClueWeb09 and ClueWeb12 datasets and the Sifaka data mining application.
The FAKE GAME tool uses natural evolution to evolve Data Mining models. It incorporates several preprocessing, optimization and visualization methods aimed to streamline the Knowledge Discovery process. Knowledge Extraction from data is being automated!
The Inverse Ocean Model (IOM) is a software system for developing customized data-assimilation systems for numerical ocean models. It has also been used with general purpose hydrodynamic and geodynamic models.
Simple and intuitive 2D vector drawing for electronics and not only.
A multiplatform vector drawing program with a complete library of electronic symbols. Schematics and drawings are stored in a very compact text format. There is no netlist concept behind the drawings (so no simulation, and this is a choice) but this allows a great graphical flexibility and ease of use, making FidoCadJ the perfect tool for exchange sketches in forum and newsgroup discussions with a few clicks. Drawings can be exported in several graphic formats, such as pdf. Follow the development live on Twitter: https://twitter.com/davbucci
Freemat is an interpreted, matrix-oriented development environment for engineering and scientific applications, similar to the commercial package MATLAB. Freemat provides visualization, image manipulation, and plotting as well as parallel programming.
A web based Geographic Metadata Catalog for data description and discovery. It implements international standards (e.g. ISO19115/19139, ISO19115-3, Z39.50, CSW 2.0, OGC). It originates from the United Nations and is used by many governments as geoportal software Source code available on github https://github.com/geonetwork/
A portable, multi-platform, command-line driven graphing utility
A famous scientific plotting package, features include 2D and 3D plotting, a huge number of output formats, interactive input or script-driven options, and a large set of scripted examples.
Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
ASCEND is a modelling environment and solver for large or small systems of non-linear equations, for use in engineering, thermodynamics, chemistry, physics, mathematics and biology. Solvers for both steady and dynamic (NLA & DAE) problems, are provid
The OpenGL Extension Wrangler Library is a simple tool that helps C/C++ developers initialize extensions and write portable applications. GLEW currently supports a variety of operating systems, including Windows, Linux, Darwin, Irix, and Solaris.
K-3D is the free (as in freedom) 3d modeling, animation, and rendering system.
Computer Algebra System written in Common Lisp
Maxima is a computer algebra system comparable to commercial systems like Mathematica and Maple. It emphasizes symbolic mathematical computation: algebra, trigonometry, calculus, and much more. For example, Maxima solves x^2-r*x-s^2-r*s=0 giving the symbolic results [x=r+s, x=-s]. Maxima can calculate with exact integers and fractions, native floating-point and high-precision big floats. Maxima has user-friendly front-ends, an on-line manual, plotting commands, and numerical libraries. Users can write programs in its native programming language, and many have contributed useful packages in a variety of areas over the decades. Maxima is GPL-licensed and largely written in Common Lisp. Executables can be downloaded for Windows, Mac, Linux, and Android; source code is also available. An active community maintains and extends the system. Maxima is widely used: annual direct downloads exceed 300,000. Many other users receive it through secondary distribution.
OpenGrADS provides extensions and interfaces for GrADS.
The Grid Analysis and Display System (GrADS) is an interactive desktop tool for easy access, manipulation, and visualization of earth science data. The OpenGrADS Project seeks to develop advanced interfaces and extensions based on the main GrADS engine.
The Free / Libre / Open Source Web App with the most built-in features
"Software made the wiki way" A full-featured, web-based, multilingual (40+ languages), tightly integrated, all-in-one Wiki+CMS+Groupware, Free Source Software (GNU/LGPL), using PHP, MySQL, Zend Framework, jQuery and Smarty. Tiki can be used to create all kinds of Web applications, sites, portals, knowledge base, intranets, and extranets. Tiki is the Open Source Web Application with the most built-in features. Highly configurable and modular, all features are optional and administered via a web-based interface. Major features include a wiki engine, news articles, discussion forums, newsletters, blogs, file galleries, bug and issue trackers (form generator), polls/surveys and quizzes, banner management system, calendar, maps, mobile , RSS feeds, category system, tags, an advanced themeing engine, spreadsheet, drawings, inter-user messaging, menus, advanced permission system for users and groups, search engine, external authentication, etc. Security reports: email@example.com
GLScene is an OpenGL based 3D library for Delphi, C++Builder and Lazarus. It provides visual components and objects allowing description and rendering of 3D scenes in graphic applications.
2D & 3D TeX-Aware Vector Graphics Language
Asymptote is a powerful descriptive vector graphics language for technical drawing, inspired by MetaPost but with an improved C++-like syntax. Asymptote provides for figures the same high-quality typesetting that LaTeX does for scientific text.
FreeImage is a library project for developers who would like to support popular graphics image formats (PNG, JPEG, TIFF, BMP and others). Some highlights are: extremely simple in use, not limited to the local PC (unique FreeImageIO) and Plugin driven!
Ns is a discrete event simulator targeted at networking research. Ns provides substantial support for simulation of TCP, routing, and multicast protocols over wired and wireless (local and satellite) networks.
Kordil EDMS the Electronic Document Management System with power tools is a user friendly document control and management system to gather all documents and key and important information within your organizations under a single database.
A PDF Reader and Note-taker for OS X
Skim is a PDF reader and note-taker for OS X. It is designed to help you read and annotate scientific papers in PDF, but is also great for viewing any PDF file. Skim requires Mac OS X 10.6 or higher.
Open Source Computer Vision Library
The Open Source Computer Vision Library has >2500 algorithms, extensive documentation and sample code for real-time computer vision. It works on Windows, Linux, Mac OS X, Android and iOS. Homepage: opencv.org Q&A forum: answers.opencv.org Documentation: docs.opencv.org Please pay special attention to our tutorials! http://docs.opencv.org/3.2.0/d9/df8/tutorial_root.html Books about the OpenCV are described here: http://opencv.org/books.html