Parallel processing pipeline for analysis of bisulfite sequencing data
Bisulfite sequencing (BSseq) processing is among the most cumbersome next generation sequencing (NGS) applications. Though some BSseq processing tools are available, they are scattered, require puzzling parameters and are running-time and memory-usage demanding. We have developed P3BSseq, a parallel processing pipeline for fast, accurate and automatic analysis of BSseq reads that trims, aligns, annotates, records the intermediate results, performs bisulfite conversion quality assessment, generates BED methylome and report files following the NIH standards. P3BSseq outperforms the known BSseq mappers regarding running time, computer hardware requirements. We optimized the P3BSseq parameters for both directional and non-directional libraries, and for both single-end and paired-end reads of Whole Genome and Reduced Representation BSseq. P3BSseq is a user-friendly streamlined solution for BSseq upstream analysis, requiring only basic computer and NGS knowledge.
ScreenSifter is a unique tool for RNAi Screen analysis and management
ScreenSifter can help you in managing all your RNAi screens related projects in organized fashion. ScreenSifter, to perform the sequential, user friendly, guided, and advanced statistical analyses of RNAi screening results. User can upload their raw signal intensities and will avail complete quality control of screen, hit selection, plotting of hit genes with gene ontology, comparing of replicates or comparing of channels. In addition, ScreenSifter has visualization tools to plot specific genes or gene groups in the screen data. ScreenSifter also provides Gene Set Enrichment Analysis (GSEA), protein-protein interaction directly on the plot. Publication: ScreenSifter: analysis and visualization of RNAi screening data Pankaj Kumar, Germaine Goh, Sarawut Wongphayak, Dimitri Moreau and Frédéric Bard BMC Bioinformatics. 2013 Oct 3;14(1):290. http://www.biomedcentral.com/1471-2105/14/290/abstract
a small and simple toolkit for LSB based steganalysis
This is a small and simple toolkit that might be useful during steganalysis, it is currently composed by several general purpose command line tools. NOTE: this project has been moved to https://github.com/luca-m/lsb-toolkit
Пакетная обработка баз 1С
Программа для пакетного архивирования, обновления (в дальнейшем обслуживания, проверок, восстановления и прочего) баз данных 1С. Предназначена для использования как стационарного, так и портативного использования. Поддержка windows 2k/XP/Vista/7/8/10 (32/64 bit), платформы 1С 8.2, 8.3.
Server part of autotestnet net edition (since 2.0)
This project is used for server side of autotestnet (start from version 2.0) net edition. From v2.0, autotestnet use http to contact server(mysql) for all data storage, and a public service site was launched in pythonanywhere to support this. Before that, it contact mysql server directly by mysqltcl which need user to maintain mysql server by themselves, and, install mysqltcl is also a pain sometimes.
Programe to design coloumbs in commpression
CCryption is a simple opensource text encryption program
CCryption is a simple opensource text encryption program, please visit: http://anprogram.net/ccryption-opensource/
Spool you scalar data in CSV format from 14 major Databases.
Command line tool for data export from major relational data stores (RDBMS). DB2 Advanced Enterprise Server DB2 Advanced Workgroup Server DB2 Developer Edition DB2 Enterprise Server DB2 Express DB2 Express C DB2 Workgroup Server Exadata Infobright Informix IDS Informix Innovator C MariaDB MySQL Oracle Oracle XE PostgreSQL SAP Sybase ASE SQL Lite SQL Server Enterprise SQL Server Express Sybase IQ Sybase SQL Anywhere TimesTen
Extract table data is CSV format from 14 databases.
Spools data for a given query or table from 14 databases. Windows command-line application.
Loads CSV file to14 databases
Windows command line tool for CSV data load to 14 relational stores.
Game in which you click a square.
Click a square faster to gain more points! In colour!
CometZ is a simple side scrolling space shooter
CometZ v0.2 (15.02.2014) Copyright 2014 Alexandre Lopes and Filipa Silva = Description = CometZ is a simple side scrolling space shooter whose objective is to destroy enemies ships while avoiding that our ship's shield is reduced to 0. It features several kinds of enemy ships and health power ups to replenish shield. = Running the game = If you have the source code version of CometZ, run python cometz.py on the command prompt. If you have the windows compiled version just execute cometz.exe = How to play = Use the arrow keys to move around in the menu and the spacebar or return key to select the desired menu item. During game the controls are the following: spacebar - fire lasers up arrow - move ship up down arrow - move ship down left arrow - move ship left right arrow - move ship right escape - pause menu You can replenish your shield by picking up shield power-ups. Blue for 25% shield and red for 100%.
Extracts table or query data from SQL Server 2005, 2008, 2012
#SaveUkraine #StopRussia #FreeUkraine #StopPutin #CrimeaIsUkraine #UnitedForUkraine #RussiaInvadedUkraine Spools/extracts/dump table or query data from SQL Server 2015, 2008,2012. Serial spool creates single dump file. Turbo mode offers 5x spool performance improvement. Sharded turbo more creates multiple files.
Data Copy tool for SQL Server and Oracle
Migrate your data from SQLServer to Oracle without creating single dump file. Input is a SQLServer query file defining dataset you want to copy to Oracle. Target table has to exist for copy to go through. Turbo mode offers 5x copy performance improvement.
Extract-Copy-Load (ECL) tool for 14 databases.
Extract, Copy and Load operations for: 1. Sybase ASE 2. Informix Innovator C 3. Sybase SQL Anywhere 4. DB2 UDB 5. SQLServer 6. MariaDB 7. Sybase IQ 8. PostgreSQL 9. MySQL 10. Informix IDS 11. TimesTen 12. Oracle 13. SQL Lite 14. Exadata Total 224 data copy vectors. CSV -> DB. DB->DB DB->CSV
Ad-hoc data replication for Oracle database.
Pipe your scalar data between Oracle databases.
MLE survival analysis: Gompertz, Weibull, Logistic and mixed morality.
DeDAY (Demography Data Analyses) is a tool of analyzing demography data. It supports Gompertz, Weibull and Logistic distributions. DeDay also supports mixed mortality models based on these distribution such as the Gompertz-Makeham distribution. Distributions such as Gompertz describes only age-dependent mortality, which increases over time. Mixed mortality models, such as in Gompertz-Makeham distribution, consider a more general case where mortality is consist of both age-dependent and in-dependent mortality. Mixed models partition mortality into exogenous and endogenous components, so that the intrinsic survivorship can be estimated without the interference from extrinsic noise. DeDAY supports both interval-censored data and exact event-time data. Using MLE (Maximum Likelihood Estimate), DeDAY fits statistic model to the data. DeDAY also calculates the variances and the multi-dimensional confidence limits of model parameters. DeDAY is free for academic users.
for calculating tamilnadu eb bill electricity bill its free software.
A program for calculating the Electric bill of Tamilnadu., Its a free source but please generate the code from exe file by yourself.Its completely free.
Limpiar USB, SD de Virus que crea accesos directos (Troyano/JS)
Foca Cleaner es un pequeño software de desinfección de unidades de almacenamiento externo que comúnmente son infectados por un Troyano JS que es el virus más reciente que he visto hasta ahora (21/04/13). El objetivo del programa no es solo desinfectar memorias USB o demás unidades de almacenamiento extraíbles sino desinfectar las PCs infectadas por dicho virus, por tal motivo este software cuenta con dos pestañas.
Calculate some BASIC mathematical function
Calculate some BASIC mathematical function You can browse the source at: https://github.com/TheNiceGuy/FunctionCalculator
Reproductor mp3 que vincula cuentas de twitter
Glmplayer es un reproductor mp3 ligero que permite al usuario vincular su cuenta de twitter para compartir la música que está escuchando. Además posee soporte para metadatos y una interfaz ligera pero al mismo tiempo muy atractiva.
Genomic Region Archiving and Binding Sites Analysis (BiSA)
BiSA is a bioinformatics database resource that allows investigators to run a number of overlapping genomic region analyses using their own datasets, or against the pre-loaded Knowledge Base. Analysis results can be restricted to a chromosome; the minimum base pair overlap in two sets or maximum distance between regions can be set; as can the maximum allowed distance between region centres. BiSA is capable of reporting overlapping regions that share common base pairs; regions that are nearby; regions that are not overlapping; average region sizes. BiSA can also annotate binding regions of interest with nearby genes. The results of overlap analysis can be imported into the Knowledge Base, allowing them to go into downstream analysis and independent annotation. A Venn diagram tool is also integrated into the software to allow users to visualize overlap results.
Python script that produces a tight pdf from gnuplot with psfrag text.
Gnuplot is a widely known script based free plotting program. This script (gpt2pdf) makes it possible to generate pdf figures with 2D LaTeX maths on top of it by including psfrag replacements directly as comments in the gnuplot file. The resulting pdf file doesn't contain any extra white-spaces around it and as such can be comfortably included in any (pdf)LaTeX file. Requires: Python 2.4 - 2.7, LaTeX and the system commands ps2epsi and epstopdf which comes in with any ghostscript installation. Dr. Shibaji Banerjee Department of Physics St. Xavier's College, Kolkata Included: Main file: gpt2pdf.py demo file: demo.plt demo file; K.plt and K.txt Usage: gpt2pdf demo gpt2pdf K The script is written in pure python. It is easy enough for customization.
Python graphing calculator
A calculator that displays an inputted function.