A C++ library for the computation of bifurcation diagrams: it provides tools for the integration of systems of ODEs that depend on parameters. A Python interface is included.
A Matlab Toolbox for uncertainty analysis of biochemical networks via semidefinite programming.
BrOxy is an open-source program used to analyse haemodynamic brain oxygenation from near-infrared spectroscopy data. It covers data import/export, filtering, correlation and multi-variate regression analysis, visualisation...
C2Mat is a simple wrapper library that allows OpenCV data structures to be transferred between C++ and Matlab. It lets a program combine the speed of OpenCV with the power of Matlab.
CDMA-ICA: A Blind Source Separation Approach to enhance CDMA's performance
CMMFile is a fast and easy to use binary file exchange interface between c++, Mathematica and Matlab
CQT-FW is an audio analisys tool for multiple pitch recognition
CQT-FW(Constant Q transform with Fixed length Window) is a time-frequency transform for multiple pitch recognition in audio signals(songs). The transform CQT(Constant Q Transform) provide analisys frequencies in a exponencial way, like music does, but it have problems with the time resolution. In CQT-FW we have the same frequency resolution as CQT, but with fixed length windows in time, what leads to a constant time resolution as well. And more, time and frequency resolution are not dependent like in CQT end DFT transforms. We also propose a post processing witch eliminate the high order harmonics, leaving only the fundamental frequencies. The transform got good results in a good range of frequencies, but still have problems in low frequencies.
The toolbox is dedicated to processing electro-encephalographic (EEG) data in general and more specifically offer tools to 1. analyse sleep EEG data and 2. reject the artefacts polluting the EEG data when they were recorded alongside fMRI.
A tool to register and superpose CTF MEG SAM(g2) result and MRI image into one gray-level image.
Cell Motility Analysis Package analyzes timelapse sequences of moving cells. Various quantitites characterizing motility are calculated, including normal velocity of the membrane, cell contact area, and spatio-temporal auto-correlation functions.
CDS plots and analyzes output from numerical climate models. It is capable of comparing climate model simulations and/or observational data. It consists mostly of a series of MathWorks Matlab language scripts and reads data in NetCDF format.
Visualization and clustering analysis of X-Ray diffraction data from combinatorial thin film libraries.
A model that projects climate change impacts to coral reefs
The COMBO model projects climate change impacts to coral reefs based on estimated future changes in sea-surface temperature and ocean acidification. Outputs include estimated timing of bleaching events, changes in coral reef cover, and associated changes in economic values.
A compliation of Physics derived claculators
A NEW GUI VERSION WILL BE RELEASED SOON! Thank you for visiting the Physics Calculator, provided by PIezoSystems Inc., please visit their company website at https://piezosystems.org. For other downloads, please visit our github page, https://github.com/PiezoSystems. We hope that you find this program useful and easy to use, for troubleshooting, please email us, email@example.com. If any bugs were found, please email us at firstname.lastname@example.org.
Compton simulate the interactions betwen a laser beam and an electron beam to create high energy photons (X-rays).
The CASP (Computational Auditory Signal Processing and Perception) model accounts for various aspects of simultaneous and non-simultaneous masking in human listeners. The model is implemented in the Matlab / Octave scripting language.
An automated controller testing tool
Copyright 2014 Alvin Stanescu, Software Engineering Chair @ Technische Universitaet Munchen Licensed under the Apache License, Version 2.0. Please refer to https://github.com/AlvinStanescu/ControllerTester/blob/master/README.md for further details.
Cupid: simultaneous reconstruction of miRNA-target and ceRNA networks
Chiu et. al., Genome Research 2014 Cupid is a method for simultaneous prediction of miRNA-target interactions and their mediated competitive endogenous RNA (ceRNA) interactions. We showed that our integrative approach significantly improves on miRNA-target prediction accuracy as assessed by both mRNA and protein level measurements in breast cancer cell lines. Cupid is implemented in 3 steps: Step 1: re-evaluate candidate miRNA binding sites in 3’ UTRs, as inferred by TargetScan, miRanda and PITA by integrating their scores, location in the 3’ UTR, and cross-species conservation. Step2: interactions are predicted by integrating information about selected sites, their multiplicity, and the statistical dependency between the expression profiles of miRNA and putative targets. Likelihoods for each predictive feature are computed based on a positive gold standard set. Step 3: Cupid assesses whether inferred targets compete for predicted miRNA regulators.
Digiscope is a MATLAB-based program used at the University of Wisconsin in BME 463 - Computers in Medicine.
<Temporarily Unavailable Online> This project is aiming at completing a library of open codes (mainly based on MATLAB at present) to deal with Dipoles-Cavity Interaction problems. Common methods, including Green's function method and Master Equation method et al, will be applied to the coding. Samples of calculations and standard comparison with publications using the library will be given for demonstration of the usage. Interface to some commonly used software, such as Lumerical FDTD Solutions, will also be developed in the project. This project is titled under nanophotonics, quantum optics, nano-optics, computational physics and physics.
A Distance Scaling Method to Improve Density-based Clustering
The code will be published once the corresponding paper has been published.
A framework for solving large systems of linear equations (Ax=b) in a distributed network using different iterative methods. The solver is written on Java, can be run on Windows or Linux. The solver is compatible with either MPICH2 or mpj-express.
This project is devoted to the creation of an open source Error-Correcting Output Codes (ECOC) library for the Machine Learning community. The ECOC framework is a powerful tool to deal with multi-class categorization problems.
MATLAB-based toolbox for exploratory analysis of EEG data. Supports both univariate analysis and multivariate pattern analysis, and can process large amounts of data in parallel. Includes advanced plotting functions and PDF report generation.
This is a MATLAB toolbox for the quality control and scoring of EMAP and SGA genetic interaction data. It includes a graphical user interface and some automatic plot-generating tools.