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db4o is the world's leading open source object database for Java and .NET. Leverage fast native object persistence, ACID transactions, query-by-example, S.O.D.A object query API, automatic class schema evolution, small size (http://developer.db4o.com)40 weekly downloads
The Eigenbase Project is an open-source platform for building advanced data management systems, and is backed by a non-profit organization which designs, develops, and promotes it.1 weekly downloads
iMeMex is a dataspace management system. iMeMex is a research prototype. The package also provides several useful components for research such as external sorting, B+-trees, inverted indexes, content converters, query operators, and graph indexes.1 weekly downloads
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Fennel is a library of data storage and processing components written in C++. It is developed as a sub-project of The Eigenbase Project, and also serves as a substrate for the Farrago project.
IntelliJAF is an extensible platform for building modular and extensible Java applications. It provides a core of plugins/services designed to build with minimum effort client/server applications.