Concurrent Data Structure library
CDS (Concurrent Data Structures) is a C++ template library of lock-free and fine-grained lock-based algorithms. It contains a collection of concurrent data structures: queues, stacks, sets, maps, etc, and safe memory reclamation schema for concurrent containers - Hazard Pointer and user-space RCU. See doxygen doc http://libcds.sourceforge.net/doc/cds-api/index.html. The source code repo for libcds 2.x has been moved to https://github.com/khizmax/libcds
simulated annealing optimization and importance-sampling
Adaptive Simulated Annealing (ASA) is a C-language code that finds the best global fit of a nonlinear cost-function over a D-dimensional space. ASA has over 100 OPTIONS to provide robust tuning over many classes of nonlinear stochastic systems.
LASS : Library of Assembled Shared Source. Library of C++ code for scientific purposes.
Now part of Apache's Mahout machine learning project at http://mahout.apache.org/-- please see there for latest info and code and releases and support!
darknocK detects edges in images. It is using Artificial Neural Networks to enchance the results of standard algorithms.
Some Useful C-Utilities
Libcutils provides a self-contained set of fundamental routines which are essential to basically any Unix utility or daemon application written in C. The library provides fundamental data structures such as lists, hash-maps, strings and parsing functions for JSON or the typical dot-file based configuration data. The following list summarizes the currently supported functionality: * length delimited instead of NULL terminated strings * memory management based on reference counting * several list processing functions like iterators and map-reduce * support of [Ideal Hash Tries](http://infoscience.epfl.ch/record/64398/files/idealhashtrees.pdf) for highly efficient hash map data structures * parsers for [JSON](http://json.org) data and the text configuration files found in Unix system * doubly linked circular lists for reliable event queues * support for test and debugging of memory management problems such as memory leaks
Multicore SWARM (Software and Algorithms for Running on Multicore Processors) is an open source library for developing efficient and portable implementations that make use of multi-core processors. David A. Bader (Georgia Tech) began SWARM in 1994.
Software package for the joint genotyping
quadGT is a software package for the joint genotyping of two parents, child’s normal genome and child’s tumor genome based on sequencing reads aligned to a reference genome.
A Deformable Medical Image Registration Toolbox
DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse brain development, etc); -- Registration under missing correspondences (e.g., vascular lesions, tumors, histological cuts). DRAMMS runs in command line in UNIX/Mac OS, It accepts Nifti/ANALYZE/MetaImage image formats. It is fully-automatic --- takes two input images, and generates a registered image and (optionally) the deformation field. More information (installation, tutorial, manual, demonstration, FAQ, etc) can be found at http://www.rad.upenn.edu/sbia/software/dramms/ .
Fiona is a tool to automatically analyze the interactional behavior of a given oWFN. It provides two techniques: it checks for the controllability of the given net by computing the interactiong graph and it calculates the operating guideline for the net.
A dictionary based compressor, that is is different from Lempel Ziv encoding that it doesn't use match lengths and does not need perfect matches.
Synthetica is a Java program that is used to synthesize, analyze and simulate spatial linkages. Its' open architecture allows advanced users to add Java code to the system. It runs on Win32, MacOSX, Linux, Solaris and uses JOGL (OpenGL) for 3d graphics.
This project has moved. Please follow the WWW link below.
Threading Building Blocks offers a rich and complete approach to expressing parallelism in a C++ program. It is a library that helps you leverage multi-core processors for performance and scalability without having to be a threading expert.
antigift is simple cross-platform, files & folders encryption tool
antigift could be used for encryption files & folders on USB-flash or HDD partition(with ccrypt in background). Works out of box on Linux, Windows, FreeBSD, MacOS X and other on OSes. Do not required installation. Included wipe tool for wiping free space and misskey for recovering partially forgotten key. See documentation at http://sourceforge.net/p/antigift/wiki/Home/ antigift простой и кросс-платформенный инструмент для шифрования файлов и папок(с ccrypt в качестве основы) Подробности см. на страничке с русской документацией http://sourceforge.net/p/antigift/wiki/rus/
RSA 4096 C++ library
Libnsa stands literally for "Library: Non Semper erit Aestas". It is a small C++ library which implements RSA encryption. The current version only creates the 4096 bit public and private keys.