Algorithms Software

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Algorithms Software

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  • Systems Biology Software Project

    This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.

  • RPnP-C++

    RPnP C++ implemention

    I have written the code of RPnP available at http://xuchi.weebly.com/uploads/5/6/7/3/5673896/rpnp1.0.zip in C++ with the help of OpenCV

  • Adaptive Simulated Annealing (ASA) Icon

    Adaptive Simulated Annealing (ASA)

    simulated annealing optimization and importance-sampling

    Adaptive Simulated Annealing (ASA) is a C-language code that finds the best global fit of a nonlinear cost-function over a D-dimensional space. ASA has over 100 OPTIONS to provide robust tuning over many classes of nonlinear stochastic systems.

  • LibSEDML: Sharing Simulation Experiments Icon

    LibSEDML: Sharing Simulation Experiments

    This project hosts a library and tools for sharing simulation experiments encoded using SED-ML.

  • Ben(Zai)Ten - visual modeling editor

    Ben(Zai)Ten is a graphical modeling environment for computational and systems biology. It supports the community exchange standards: SBML, SBRML, SED-ML as well as ontologies: MIRIAM, SBO, ChEBI, KEGG, GO

    Downloads: 0 This Week Last Update: See Project
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    See how tech-sector leadership is being redefined in today’s complex business environment.

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  • MLPACK C++ machine learning library

    MLPACK is a C++ machine learning library with emphasis on scalability, speed, and ease-of-use. Its aim is to make machine learning possible for novice users by means of a simple, consistent API, while simultaneously exploiting C++ language features to provide maximum performance and flexibility for expert users. For more information, see http://mlpack.org

    Downloads: 0 This Week Last Update: See Project
  • CheckSum Library

    This library contains functions to calculate hash values and checkdigits like Adler, MD5 and much more. Over 30 different hash codes, checkdigits and barcodes will be supported.

    Downloads: 0 This Week Last Update: See Project
  • pyMinimize

    pyMinimize minimizes a function that depends on discrete or continuous parameters. It can be used in a local or distributed environment

    Downloads: 0 This Week Last Update: See Project
  • Stanford GraphBase in C++

    This project will host the implementation of Stanford GraphBase Library (Donald E. Knuth) in Modern C++ using boost and beyond in headers-only library.

    Downloads: 0 This Week Last Update: See Project
  • Diagonal

    A command line toolki to solve a problem your favorite program defines

    Diagonal can be used for: - getting descriptive statistics such as mean/median/mode with your program producing a sample - finding a root of an equation your program defines - calculating a fixed point of a function your program defines - detecting a cycle of a fuction your program defines as well as - decoding a VCDIFF file

    Downloads: 0 This Week Last Update: See Project
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  • Vavuma

    An O(1) memory allocator, which may be used to replace malloc. It's very small and very fast.

    Downloads: 0 This Week Last Update: See Project
  • Intelligent Worm

    ‘intelliworm’ is a prototype simulation of a Intelligent Species of a common earth worm,which inherits human like decision making capabilities through Neural Network intelligence representation,all developed by integrating .NET with Lisp and Yacc.

    Downloads: 0 This Week Last Update: See Project
  • TAOCP in C++

    This project attempts to host the complete re-write of all the programs(including exercises too) of the seminal volumes of The Art of Computer Programming by Donald E. Knuth in modern C++, mostly using boost in a header-only C++ library.

    Downloads: 0 This Week Last Update: See Project
  • The Practice of Parallel Programming

    An electronic draft edition of the book "The Practice of Parallel Programming" and examples from both draft and printed editions. Download or read from the web, The printed edition is corrected and improved, however the online draft edition gives a good idea of what the book is about.

    Downloads: 1 This Week Last Update: See Project
  • SenseRank

    SenseRank Sys: - builds the dictionaries (multidim matrices) of words’ values; - for the set utterance in certain language builds a figure in multidimensional space (in the matrix space) of values (visual schema), which is topological view of sense

    Downloads: 0 This Week Last Update: See Project
  • basE91

    basE91 is an advanced method for encoding binary data as ASCII characters. It is similar to UUencode or base64, but is more efficient. The overhead produced by basE91 depends on the input data. It amounts at most to 23% and can range down to 14%.

    Downloads: 30 This Week Last Update: See Project
  • High-order HMM in Matlab

    Implementation of duration high-order hidden Markov model in Matlab.

    Implementation of duration high-order hidden Markov model (DHO-HMM) in Matlab with application in speech recognition.

  • Introduction to Algorithms : CLR in C++

    This project will attempt to provide a headers-only library in Modern C++( boost) for all the programs(including exercises) of the famous book: Introduction to Algorithms by Cormen et al, also known as CLR book.

    Downloads: 0 This Week Last Update: See Project
  • Gerty

    A C++ RAII ( Resource Allocation Is Initialization ) implementation of an automatic pointer/reference. Pointable/Referenced objects are handled in a manner similar to Python. Strives to have the simplest syntax possible.

    Downloads: 0 This Week Last Update: See Project
  • Anfislab

    Este proyecto constituye una adaptacion y mejora del codigo ANFIS de dominio público de Roger Jang. / This project is an adaptation and improvement of the original public domain ANFIS code of Roger Jang.

    Downloads: 0 This Week Last Update: See Project
  • bitswarm

    Bitswarm is a computational-oriented project: it provides a library of n-dimensional bit-array manipulation primitives. Unix and win32 platforms are supported.

    Downloads: 0 This Week Last Update: See Project
  • drvq

    dimensionality-recursive vector quantization

    drvq is a C++ library implementation of dimensionality-recursive vector quantization, a fast vector quantization method in high-dimensional Euclidean spaces under arbitrary data distributions. It is an approximation of k-means that is practically constant in data size and applies to arbitrarily high dimensions but can only scale to a few thousands of centroids. As a by-product of training, a tree structure performs either exact or approximate quantization on trained centroids, the latter being not very precise but extremely fast. A detailed README file describes the usage of the software, including license, requirements, installation, file formats, sample data, tools, and options. With the sample data provided and the default options, it is possible to test the code immediately as a demo. DRVQ has a 2-clause BSD license. Please refer to the DRVQ software home page, the research project, or the original publication for more information. The latest code is available at github.

    Downloads: 1 This Week Last Update: See Project
  • fqpack

    FASTQ compression

    Provides bitwise, context-based 2nd generation data compression for large FASTQ-based files

    Downloads: 0 This Week Last Update: See Project
  • TTMath - a bignum library for C++ Icon

    TTMath - a bignum library for C++

    A bignum library written in the C++ programming language as templates. It provides standard mathematical operations like add, sub, mul, div, pow etc. with the big integer and big floating point numbers.

  • uthash

    This is a hash table, implemented in C, supporting constant-time add/find/remove of C structures. Any structure having a unique, arbitrarily-typed key member can be hashed by adding a UT_hash_handle member to the structure and calling these macros.

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