TimeFinder automatically optimizes schedules (timetables) for universities and high schools. It makes manual timetabling for the timetabler easier via a Java GUI. Export+import is supported via xml and text formats. http://timefinder.sourceforge.net/
One of the leading short-/long-read aligner to large genomes
CUSHAW2 is a fast and parallel gapped read alignment to large genomes, such as the human genome. The performance evaluation, by aligning simulated and real datasets to the human genome, shows that CUSHAW2 is consistently among the highest-ranked aligners in terms of alignment quality for both single-end and paired-end alignment, while demonstrating highly competitive speed. Furthermore, our aligner shows good parallel scalability with respect to the number of CPU threads.
A markup language for expressing knitting patterns which can serve as a software interchange format
Broccoli contains: -real and complex numbers,vectors,matrices,functions,polynomials -function minimizers,evolutionary algorithms,neural networks -pdfs,cdfs,max-likelihood,regression,DGPs,PRNGs,armax,garch,statistical estimation etc. -friendly JavaSwingGUI
FunctionalJ is a library which makes it easy to use functional programming patterns in Java, such as representing functions as objects, partial function application, higher-order functions, mapping, folding, and more.
The Java Boolean Expression Library (JBEL) enhances the Java Collections API by implementing on-the-fly sorting, filtering and reasoning capabilities including, select(), collect(), reject(), detect(), doForEach() using functional programming techniques.
Utility classes, APIs and tools for Java
A set of helper and utility classes, APIs and tools for the Java Programming Language. For more details - pleas visit the project homepage.
A Map (or HashTable) for Java that is backed by the filesystem to provide unbounded size. Additionally, MegaMaps may remain on disk between VM invocations, providing persistent hashtables.
Programa per trobar el numero més petit.
OCIPlus is a C++ library that can be used to access oracle database. It is similar to JDBC (has similar classes & methods) and can run stored procedures too.
Operations Research EXperiment Framework for Java
a parallel and space-efficient Burrows-Wheeler transfrom constructor
Physhun is a Java framework for building and executing finite state machines in J2SE and J2EE environments. State models are defined as collections of Spring beans, and do not use proprietary modeling languages. The framework is simple and flexible.
PPFN, it is also a tool to be hidden from any server log, these developers know what they have to do. Do you? If you download this ultimate package you will be able to enjoy the web knowing that you would be safe. So be safe, learn to surf right - PPFN
A threaded Web graph (Power law random graph) generator written in Python. It can generate a synthetic Web graph of about one million nodes in a few minutes on a desktop machine. It implements a threaded variant of the RMAT algorithm.
This project contains a set of tools for working with files in java
Smith-Waterman long DNA sequence alignment on Xeon Phi clusters
The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host.
Encrypt your message with various algorithms.
Sandcrypt will encrypt your text / messages with various algorithms so othe people can't read it and keep your messages secure. Now only available MD5 Algorithm. More will be announced on the next major updates.
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A open source library allowing approximations of closures using the Java language.