A plugin for the quantitative analysis of Immunohistochemistry samples
Identification and scoring of cancer markers by Immunohistochemistry has been shown to be of value in determining the aggressiveness of specific cancers, as well as in predicting patient outcome for many cancer types. Despite its routine clinical use, a problem with the standard scoring method is the inherent subjectivity and variability of purely visual inspection. To diminish this visual perception biasing, IHC profiler has been developed as a standard automated scoring tool. -x-x-x-x-x-x-x- Full Publication and Citation: Varghese F, Bukhari AB, Malhotra R, De A (2014) IHC Profiler: An Open Source Plugin for the Quantitative Evaluation and Automated Scoring of Immunohistochemistry Images of Human Tissue Samples. PLoS ONE 9(5): e96801. doi:10.1371/journal.pone.0096801 Link: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0096801 -x-x-x-x-x-x-x- Your feedback would be highly appreciated. Please rate so we can work on improving it further. Thank you!
minidjvu is a DjVu encoder for black-and-white images.
iat is Iso9660 Analyzer Tool, this tool have engine for detect many structure of image file
PHPXref is a developers tool, written in Perl, that will cross reference and extract inline documentation from a collection of PHP scripts. It generates simple HTML output suitable for browsing offline.
Qt-based FFT implementation
A Qt library for Fast Fourier Transform (FFT) of real samples. Based on the FFTReal library.
A C++ template library extending syntax towards mathematical notation
ivl is a full-header template C++98 math library with convenient yet powerful syntax. It extends classic C++ syntax towards mathematical notation while making use of the language's elements like classes, structs, operators and functions. Expression written using ivl are excessively optimized. In other words, ivl allows writing simpler and more expressive statements using math-like formulas while taking care of optimizing them. ivl features arrays, tuples and custom function-like objects with left-right overloading, function pipelining and function vectorization, automatic lazy evaluation, sub-arrays and other views of a single or multidimensional arrays, stl-compatible iterators, multidimensional iterators and multithreading. ivl includes a rich set of functions and operators, including operations for image processing. Seperate modules are also included. The module ivl-lina implements a linear algebra LAPACK wrapper. The module ivl-cv integrates OpenCV into ivl.
Word List Generator for Windows
This a .net 4.5 WPF application that generates word lists, similar to crunch for linux. Just one nifty multi-threaded dictionary / code / word - list generator. It is a permutation combination engine, so it is perfect for brute force activities. Please show your appreciation and leave a review or comment, so I can find the motivation to improve it.
Large amounts of clinical information are locked up in free text of clinical adverse event reports. AEFI Tools is a toolkit to extract information from free text using NLP, machine learning and the Unified Medical Language System.
Fundamental Algorithms Resource base on Multi-cores
Ben(Zai)Ten is a graphical modeling environment for computational and systems biology. It supports the community exchange standards: SBML, SBRML, SED-ML as well as ontologies: MIRIAM, SBO, ChEBI, KEGG, GO
My personal computing suite provides some programs I developed as a hobbyist and currently include a lambda calculus interpreter and a calculator which solves arithmetic expressions; both are written in C++.
This is a Python script for Blender which uses short (quaternion-based, floretion-based) algorithms to draw curves in space. The user can create new shapes and curves by setting a variety of parameters.
Broccoli contains: -real and complex numbers,vectors,matrices,functions,polynomials -function minimizers,evolutionary algorithms,neural networks -pdfs,cdfs,max-likelihood,regression,DGPs,PRNGs,armax,garch,statistical estimation etc. -friendly JavaSwingGUI
Find case inconsistencies in the source tree. May be useful for porting applications in any programming language from case-insensitive (like Windows) to case-sensitive (like Linux) runtime environment.
Many people love programming contests. There are tons of contests or online judges like TopCoder, UVA, SPOJ, etc. This project's goal is to store and keep track of what a programmer have done and studied so far.
FORce based Cluster Editing (FORCE) is a Java software heuristically solving the graph cluster editing problem on weighted edges using BLAST E-values. It further provides a training mode for heuristic parameter estimation.
A framework for Handy Evaluation of REcommender SYstems. A very general framework to perform development, study and evaluation of any kind of recommender / personalization / mining system.
Institute of Technology, Blanchardstown Computer Science code by the class of 2007-2011 on course BN104. In this project we are open sourcing all of our project work to the public in the hopes it can be reused, built-upon, and used in education.
JBernstein: Exploration techniques for non-linear constraint checking
JBernstein is a tool implemented in Java that enables to check whether a polynomial constraint holds for all variables within their domain. It is mainly used in the verification or synthesis of cyber-physical systems where the system model is nonlinear. The tool also supports specifications in assume-guarantee style. The underlying algorithm is based on a translation to Bernstein polynomials, and several optimization techniques are implemented to ensure efficiency. Concerning performance, the tool enables to check all examples in the PVS Bernstein testsuite within a second, which can be an order of magnitude faster than some other tools such as QEPCAD or REDLOG. Although JBernstein uses double, it offers automatic error-estimation capabilities (experimental) so that the generated result is correct (the solver may return unknown when the error-estimate is too large)
Grayscale and binary image processing library for Qt.
A Computer Algebraic System. Designed to do advanced mathematical operations and calculations with a simple user interface.
Net4Native is a library that simulates some of the most useful Microsoft .Net classes in native Win32 Delphi. This allows programming with comfort without relying on the huge .Net framework and maintains source code compatibility between Win32 and .Net.
OASML is an Open-source Assembly Library which targets 8086 CPUs and contains hundreds of procedures and functions to make programming in Assembly easier. Every single line of the library is commented.
Contest system, written on PHP (some executables - on C++) for Programming contests creation. Runs only on Windows. Can use C++, Pascal or Java codes.