Search Results for "markov"
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3 programs for "markov" with 1 filter applied:
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fvm2
FVM2 - F Virtual Machine v2
FVM2 is VM for running machines like Markov algorithms, Turing machine and so on. FVM2 has debugger with step mode and breakpoints. Goal of this project is to help students with studying Theory of computation. FVM2 shows how complex code works within a real machine. Currently the only implemented machine is Markov algorithms. -
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HPeak
A HMM-based algorithm for defining enriched regions from ChIP-seq data
HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl -sp... -
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A script to generate random text using Markov chains. Output text will be stylistically similar to the training text.
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